Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0187
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566...    29   1.6  
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702...    27   3.8  

>03_05_0327 -
           23154014-23154942,23155169-23155316,23155606-23156622,
           23156753-23157217,23160258-23161247
          Length = 1182

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 183 TSTLKLKVNKRSKERRHLHVILERN 257
           T++LKLK NK+S  ++H H + E N
Sbjct: 851 TNSLKLKQNKKSARQKHHHGVPEGN 875


>10_08_0961 +
           21869612-21869773,21869869-21869956,21870047-21870277,
           21870371-21870538,21870808-21871001,21871151-21871234,
           21871315-21871434,21871621-21871714,21871813-21871973,
           21873237-21873313,21873738-21873932,21874487-21874559,
           21874635-21874721,21874906-21875043,21875181-21875383,
           21875469-21875631,21875861-21875992
          Length = 789

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +3

Query: 210 KRSKERRHLHVILERNTFTAS----PLVTSRLTLGSSEREEEAN 329
           K S E RHL + LER     S     L   R   GS+E+E E N
Sbjct: 634 KSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEIN 677


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,438,224
Number of Sequences: 37544
Number of extensions: 120172
Number of successful extensions: 203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)