Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0187
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)                   30   0.55 
SB_42746| Best HMM Match : Gas_vesicle_C (HMM E-Value=6.1)             27   5.2  
SB_4128| Best HMM Match : Luteo_Vpg (HMM E-Value=1.7)                  27   6.8  
SB_11748| Best HMM Match : Ank (HMM E-Value=1.7e-21)                   27   6.8  
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)                 26   9.0  

>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
          Length = 700

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 159 YVKKKD*RTSTLKLKVNKRSKERRHLH--VILERNTFTASPLVTSRLTLGSSE 311
           +VKKK       + +  KR KE       ++LER   T  PLVT+  +LG+ E
Sbjct: 184 WVKKKPWTEFIFRKRQRKRQKETTKYRYCLVLERQFTTLLPLVTTTKSLGADE 236


>SB_42746| Best HMM Match : Gas_vesicle_C (HMM E-Value=6.1)
          Length = 365

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 159 YVKKKD*RTSTLKLKVNKRSKERRHLH--VILERNTFTASPLVTSRLTLGSSE 311
           +VKKK       + +  KR KE       ++LER   T   LVT+  +LG+ E
Sbjct: 184 WVKKKPWTEFIFRKRQRKRQKETTKYRYCLVLERQFTTLLTLVTTTKSLGADE 236


>SB_4128| Best HMM Match : Luteo_Vpg (HMM E-Value=1.7)
          Length = 211

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 147 KATEYVKKKD*RTSTLKLKVNKRSKERRHLHVILERNTFT--ASPLVTSR 290
           KA      K  RTS+L  +  KR  +RR  H I + N+F+  ASP +  R
Sbjct: 155 KAMRTTSNKIERTSSLVERSTKRPLQRR--HTISDLNSFSPQASPSIAKR 202


>SB_11748| Best HMM Match : Ank (HMM E-Value=1.7e-21)
          Length = 564

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 110 VHSVGSSFIKVSKSHRICKKKRLTH*HFETKSQ*EIEGKKTPP 238
           +HS GSS  K S  HR  K +RL     E K    ++ K +PP
Sbjct: 209 IHSKGSSRAKSSPKHRSAKIERLRK-TKEEKQNRLLKRKASPP 250


>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
          Length = 1033

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 368 LPQLMPLSNTGELIRLFFPFRAPQS-EPARN*R*SRERVTLKDHVEVSSFLRSLID 204
           L + MP     +L+R+F+P RA  S  P  +   SR   TL  ++++  F  S +D
Sbjct: 493 LDKQMPTIRLRQLLRIFWPLRAMSSVVPQVSDPYSRTLFTLDLNMQILVFSESSLD 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,763,967
Number of Sequences: 59808
Number of extensions: 143474
Number of successful extensions: 241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)