Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0187
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical ...    31   0.28 
AC024775-1|AAK68455.1|  456|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical
           protein Y71F9B.6 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 281 YEPAHFGELGKGRRGELIHQCC 346
           Y+P  F ELG G+R  + H+CC
Sbjct: 330 YDPIAFSELGIGKRTVIRHECC 351


>AC024775-1|AAK68455.1|  456|Caenorhabditis elegans Hypothetical
           protein Y41D4A.5 protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 225 RRHLHVILERNTFTASPLVTSRLTLGSS 308
           RRHL +I E     A P+ T+ L +GSS
Sbjct: 356 RRHLGIIEEPKLDLAPPVATADLPVGSS 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,633,563
Number of Sequences: 27780
Number of extensions: 114012
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)