Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0187
         (381 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36500.1 68415.m04480 CBS domain-containing protein / octicos...    29   1.0  
At4g32350.1 68417.m04605 expressed protein contains Pfam profile...    26   7.4  
At1g06350.1 68414.m00671 fatty acid desaturase family protein si...    26   7.4  
At4g23350.1 68417.m03368 expressed protein predicted proteins, A...    26   9.7  
At1g36280.1 68414.m04509 adenylosuccinate lyase, putative / aden...    26   9.7  

>At2g36500.1 68415.m04480 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 536

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 358 SCPSATLVN*FASSSLSELPKVSRLVTSGEAVNVLRSRITWRC 230
           SCPS  LV+ FA        +V R  ++GE+   L S +  RC
Sbjct: 399 SCPSQGLVSSFAFKFEDRKGRVQRFNSTGESFEELMSVVMQRC 441


>At4g32350.1 68417.m04605 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 732

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 367 CPSSCPSATLVN*FASSSLSELPKVSRL 284
           CP  C  A     FA+S  SELP++  L
Sbjct: 95  CPEDCREAISSLMFAASGFSELPELREL 122


>At1g06350.1 68414.m00671 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 300

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = -1

Query: 174 LFFLHILWLFDT-FIK 130
           L F HILW+FDT +IK
Sbjct: 135 LLFSHILWIFDTQYIK 150


>At4g23350.1 68417.m03368 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 386

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 KVHSVGSSFIKVSKSHRICKKKRLTH 184
           KV++ G   +KV +S  IC K R  H
Sbjct: 341 KVYNPGRGTVKVHESRPICYKARYVH 366


>At1g36280.1 68414.m04509 adenylosuccinate lyase, putative /
           adenylosuccinase, putative similar to SP|P25739
           Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
           {Escherichia coli}; contains Pfam profile PF00206: Lyase
          Length = 527

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 367 CPSSCPSATLVN*FASSSLSELPKVSRLVTSGEAVNVLRS 248
           C    P  +L+N   S SLS LP+VS  V+S  ++ ++ S
Sbjct: 14  CSGLIPIRSLLN--PSKSLSHLPRVSFSVSSPHSLKLMTS 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,283,475
Number of Sequences: 28952
Number of extensions: 104380
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)