Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0183
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    32   0.066
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.61 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   1.9  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   1.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   2.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   3.3  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   3.3  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.3  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.3  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   4.3  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   5.7  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.6  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   10.0 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   10.0 
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   10.0 
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   10.0 

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 450 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 608
           I VE    QPEDSK T+V      +S +EK +    + S D  A + +++  +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 405 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 575
           AK S   D   K +  K  + A+ PE SK  V+       KEE  S +++E S+  +
Sbjct: 41  AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 408 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 584
           K S+ P+ +  +    KVEEP+ + ++   + + TV +  +E+ P        A S    
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505

Query: 585 PNMVKK 602
              VKK
Sbjct: 506 SEDVKK 511


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 460 KNQLLSLKIQKLKYKLPSLKFQKKKNL 540
           KN LLS KI +  Y+  S+++QK KN+
Sbjct: 40  KNGLLSPKITQRFYQNSSIQYQKDKNI 66


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = -1

Query: 676 ASAASGVLISGTAAASLFTLGAKSIFFTMLGMMXXXXXXXXXXXALGFSSFEISATVACT 497
           +S AS   IS  +A S     + SI  + +                  SS   S++   +
Sbjct: 202 SSVASSSEISAGSATSYVPTSSSSIALSSVVASASVSAANKGVSTPAVSSAAASSSAVVS 261

Query: 496 SVFESSG*AAGSSTLISADFASAS 425
           SV  S+   A SST+ SA  +SAS
Sbjct: 262 SVVSSATSVAASSTISSATSSSAS 285


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 513 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPNVKSDAAAVPEIKTPEA 668
           A   K+ +PS  +   +A   +  PN VK +  D+ P   +      +I  PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 480 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVKSDAAAVPEIKT 659
           E+S   +    +E+SK  KP+ TD   +     +      K   +P  K+  AAV  ++ 
Sbjct: 33  EESLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPK-KATPAAVAPVEA 91

Query: 660 PEAAD 674
             A D
Sbjct: 92  TSAVD 96


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 344 VFWGYIVLFGLWYSGYLVVTNW 279
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 426 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 572
           D   +   I  E PA    + K   +  + + S  E+PS T  EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
 Frame = +3

Query: 453 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVKSD 632
           +VEE  A+   S         E S   KPSA  AE   D    I   V  I L    K  
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347

Query: 633 AAAVPEI---KTPEAAD 674
           +    E+   KTP   D
Sbjct: 348 SETDSEVAATKTPATED 364


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 432 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 569
           ++K  + KVEE  ++  D K +   ++    KEEK   TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 429 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 566
           AEA + D   + P       K  V  +VAE  ++E  +  ++E  A
Sbjct: 76  AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 426 DAEAKSADIKVE-EPAAQPEDSKTEVQATVAEISKEEKP 539
           D +   +DIK + E +   +DSK +V  TV EIS   +P
Sbjct: 264 DLKDMQSDIKPDVEKSDAMDDSKMKVDYTVNEISNAVQP 302


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 411  SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS 563
            SS   DA AKS   +  EPA +P +   + ++T     + EK + TD   +
Sbjct: 898  SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSST 947


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +3

Query: 420 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE---GSADSAAIIPN 590
           + DA+AK  D +  E     ++    +   +AE+ +E K ++   +          I+  
Sbjct: 730 LEDADAKVKDEESSEEELMNDEQMLALDEKLAEVFRERKKASNKEKKKNAQETKQQIVQF 789

Query: 591 MVKKIDLAPN 620
            VK IDL  N
Sbjct: 790 KVKVIDLIDN 799


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 414 SEIPDAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPSATDAEGSA 566
           S IP  E    +I VEE    +P     EV+ T A   +E+ P   D+E +A
Sbjct: 142 SPIPSPETIHKNIDVEEKETIEPTTPVKEVETT-AHAEEEKGPLTPDSEYAA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,932
Number of Sequences: 5004
Number of extensions: 34552
Number of successful extensions: 128
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)