Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0183
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.007
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 37   0.017
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)                 31   0.64 
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   31   0.85 
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       30   1.5  
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)                 30   1.5  
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)                    30   1.5  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              30   2.0  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        30   2.0  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              29   2.6  
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)                  29   2.6  
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)              29   4.5  
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 429  AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP-SATDAEGSADSAAIIPNMVKKI 605
            A  + A++ +EE   Q ED++  V+   A + K E P   T+A    D A       K +
Sbjct: 1172 ASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDEAP-AEKTEKPV 1230

Query: 606  DLAPNVKSDAAAVPEIKTP 662
            +  P+V+   A V E + P
Sbjct: 1231 EAGPSVQEAEAPVKETERP 1249



 Score = 31.9 bits (69), Expect = 0.49
 Identities = 25/87 (28%), Positives = 46/87 (52%)
 Frame = +3

Query: 411 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 590
           ++E+P  +A ++  + E PAA+PE +  E +A V + + EE P A + E + D       
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEE-PEALN-EKAEDPKDEDET 644

Query: 591 MVKKIDLAPNVKSDAAAVPEIKTPEAA 671
             +K ++ P  +++A A  E+   E A
Sbjct: 645 QEEKAEV-PIDEAEAEAQAEVAGEEKA 670



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +3

Query: 432 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDL 611
           + K  D   EE A  P D + E +A  AE++ EEK    +AE   +   +  +     + 
Sbjct: 637 DPKDEDETQEEKAEVPID-EAEAEAQ-AEVAGEEKALEEEAETLVEETKVEEDKAPIQEA 694

Query: 612 APNVKSDAAAVPEIKTP 662
             +VK   A V EI+ P
Sbjct: 695 EASVKKAEATVEEIEAP 711


>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 417 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 557
           E P  EA+S D KVE P  + E  + EV+ATV E+    + +A   E
Sbjct: 22  ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPMEEAAASVE 68


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = +3

Query: 435  AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLA 614
            AKS D+K  E A++ ++  T+      ++ K+ KP++   +  A  +A + N  K +++ 
Sbjct: 1912 AKSKDVKNAEEASRNDEDDTKTGNVSEDLIKQAKPTSKTRKKRASLSAKVTNFEKTVNVD 1971

Query: 615  PNVKSDAAAVPEI 653
               +S    +P +
Sbjct: 1972 VESQSSERELPRV 1984


>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
          Length = 410

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +3

Query: 426 DAEAKSADIKVEEPAAQPEDSKT----EVQATVAEISKEEKPSATDAEGSADSAAIIP 587
           DAE  S+ I V  P+AQ E  +T     V + +A ++ E      D+    D  AIIP
Sbjct: 285 DAEPASSSISVSVPSAQAEQGRTTEGRPVSSDIATVAMEVPEVQGDSLADVDIDAIIP 342


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +3

Query: 456  VEEPAAQPEDSKTEVQATV--AEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 617
            +E PA   ED KT+ +AT   AE+ +E KP+A D + SA S     ++   I+++P
Sbjct: 1129 LESPA---EDVKTDFEATSLEAEVFEEYKPTAKDVKESASSTV---HLAADIEISP 1178


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 408 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 587
           K++ +P+A   +A  +  E  AQPE  K        E + + + + T A+  A  A   P
Sbjct: 393 KATALPEAPKATAQPEAPEATAQPEAPKATALPEAPEATAQPEATETTAQPKAQKATAQP 452



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +3

Query: 423 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISK-EEKPSATDAEGSADSAAIIPNMVK 599
           P+A   +A  +  +  AQPE ++T  Q    + +   E P AT A+  A  A   P   K
Sbjct: 362 PEAPDATAQPEAPDATAQPEATETTAQPEAPKATALPEAPKAT-AQPEAPEATAQPEAPK 420

Query: 600 KIDL--APNVKSDAAAVPEIKTPEA 668
              L  AP   +   A      P+A
Sbjct: 421 ATALPEAPEATAQPEATETTAQPKA 445


>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
          Length = 191

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +3

Query: 414 SEIPDAE-AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEG-SADSAAIIP 587
           S++P  + AK+A+ + E+ A  PE+   E     A    E K ++ D EG +AD  A   
Sbjct: 50  SKMPSKKGAKAAEAQPEKKAEAPEEKPAEDSKDQAVEESETKDASKDGEGNAADKRA--R 107

Query: 588 NMVKKIDLAPNVKSDAAAVPEIKTPEAA 671
              KK D  P  K     V E   P  A
Sbjct: 108 GRPKKADGEPATKK-PKKVKESHVPSRA 134


>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
          Length = 636

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 408 KSSEIPDAEAKSADIKVEEPAA-QPEDSKT-EV---QATVAEISKEEKPSATDAEGSADS 572
           K +   D  + S+D  +E   A +P  S T EV     T A +  EE+PS TD EGS  +
Sbjct: 359 KQTTAHDPTSSSSDQLIEHSVAGRPSPSVTPEVAREDCTQASLQLEERPSNTDGEGSGQT 418


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = +3

Query: 405  AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 584
            AK +     +A     K    A +     + V ATVA  S   +   T  + S D+A +I
Sbjct: 1732 AKITPKASTDAAKVTPKASTEATEMTQKFSNVPATVALKSSNVEAKITP-KSSTDAARLI 1790

Query: 585  PNMVKKIDLAPNVKSDAAAVPEIKTPEAA 671
            P   K    + NVKS ++      TP+A+
Sbjct: 1791 PKASKSSTGSVNVKSRSSTNATQITPKAS 1819


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 423  PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAA 578
            PD +A + + + + P +Q EDS +    T   +S EE+P    ++ S  SAA
Sbjct: 915  PDPQAPATNNQTDNPPSQYEDSSS--SETNGVLSDEEQPPLPLSDSSIQSAA 964


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +3

Query: 408  KSSEIPDAEAKSADIKVEEPAA-QPEDSK-TEVQATVAEISKEEKPSA-TDAEGSADSAA 578
            K  +  D E K  + + E+    + E +K TEVQ  V E +KEE PS   DAE     A 
Sbjct: 1025 KKRKDSDKERKVKEKEEEQKVKIEKEPNKVTEVQLMVEETNKEESPSTDRDAESELPKAG 1084

Query: 579  IIPNMVKKIDLAPN 620
             +  ++      P+
Sbjct: 1085 SVSALLSVFATEPS 1098


>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
          Length = 595

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 538 GFSSFEISATVACTSVFESSG*AAGSSTLISADFASASGISDDF 407
           G SS ++    +C+SVFE +  A  SS L  AD + +  IS ++
Sbjct: 498 GGSSSQMDVMGSCSSVFEQAMLAGESSNLSDADKSESKDISKNY 541


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = +3

Query: 435  AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLA 614
            +K + I  E    Q  + K   Q   A  SKE K      E  + S + + + + K  L 
Sbjct: 801  SKRSKIPRENEPVQQTEIKKSTQPAPA--SKEPKREGASGESGSGSGSSVSSSITKRSLG 858

Query: 615  PNVKSDAAAVPEIKTP 662
            P  K+D+  V     P
Sbjct: 859  PLDKTDSGKVAMFAQP 874


>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
          Length = 1078

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 3   WQSQRSHIKLIFYLNNLCQCFKKRRRVTGSIFKMKVLLL 119
           W+S R+ I +    N   +C+KKR +V GS   + V +L
Sbjct: 792 WKSYRNTILIQNQSNETVRCYKKRLKVKGSEDNVNVSVL 830


>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1918

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +3

Query: 441 SADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII--PNMVKKI 605
           SA  +    A++  D ++++  + A+  K+E+ SAT  +  ++S+ ++  P+ ++KI
Sbjct: 196 SATHRTLSAASRDLDKRSDISLSSAKPEKQEQESATVEQPESESSTMVLYPHQIQKI 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,638,774
Number of Sequences: 59808
Number of extensions: 255920
Number of successful extensions: 1212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)