Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0181
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   2.1  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    24   6.5  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    24   8.6  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 181 DHITFEYGAYLLYNTVFTFQRSTQ 252
           D I  +YG  LL NT+ T++++ Q
Sbjct: 483 DAIALQYGGSLLVNTLDTYRKNNQ 506


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 105 KIRFFLRQTLPILLPSCDGSYSGAK 179
           +I F + QT PI++PS  G +  +K
Sbjct: 7   RIPFLVEQTYPIIVPSYAGWFDMSK 31


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 107 FSNY*RPALASLRKNCNLLLIF 42
           + N+  PAL+ L   C +LLIF
Sbjct: 472 YVNWVVPALSGLATGCGILLIF 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,762
Number of Sequences: 5004
Number of extensions: 25168
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)