Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0181
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16292| Best HMM Match : Lipase_GDSL (HMM E-Value=0.036)             36   0.010
SB_13120| Best HMM Match : Desulfoferrod_N (HMM E-Value=6.9)           29   1.2  
SB_9195| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   3.6  
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               27   3.6  
SB_21186| Best HMM Match : Ornatin (HMM E-Value=6.1)                   27   6.3  

>SB_16292| Best HMM Match : Lipase_GDSL (HMM E-Value=0.036)
          Length = 738

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 112 VSFFGRRYRSCCQAVMGPIAVLKDHITFEYGAYLLYNTVFTFQRSTQCKE 261
           VSF GRRY+S    ++G +A++  H T    A    NTV+  ++ T   E
Sbjct: 2   VSFTGRRYKSLVVTILGALALIVFHYTKNNEANFRQNTVYRVKQCTNILE 51



 Score = 30.7 bits (66), Expect = 0.39
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 121 FGRRYRSCCQAVMGPIAVLKDHITFEYGAYLLYNTVFTFQRSTQCKE 261
           F RRY+S    ++G +A++  H T +  A    NTV+  ++ T   E
Sbjct: 339 FRRRYKSLVVTILGALALIVFHYTKKNEANFRQNTVYRVKQCTNILE 385


>SB_13120| Best HMM Match : Desulfoferrod_N (HMM E-Value=6.9)
          Length = 151

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 127 RRYRSCCQAVMGPIAVLKDHITFEYGAYLLYNTVFTFQRSTQCKE 261
           RRY+S    ++G +A++  H T +  A    NTV+  ++ T   E
Sbjct: 2   RRYKSLVVTILGALALIVFHYTKKNEANFRQNTVYRVKQCTNILE 46


>SB_9195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 294 QDSHPHSQGTTSVGRPP--TRWTTY 362
           +D  P S  TTS GRPP  T+ TTY
Sbjct: 44  RDGAPQSHKTTSTGRPPCETQGTTY 68


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 279 NFYNSQDSHPHSQGTTSVGRPPTRWTT 359
           N YN  + H H++    V R PTR +T
Sbjct: 312 NLYNENNQHGHARTQPQVYREPTRTST 338


>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 299

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 279 NFYNSQDSHPHSQGTTSVGRPPTRWTTYCA 368
           N+Y       HSQG T+V  PP + T+Y A
Sbjct: 5   NYYGYTSGAQHSQGFTTVQNPPIQ-TSYTA 33


>SB_21186| Best HMM Match : Ornatin (HMM E-Value=6.1)
          Length = 117

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +2

Query: 62  SFSEAKRGRVASNY*NTFLSS 124
           SFSE K  RVA  Y N FLSS
Sbjct: 76  SFSELKLSRVAFAYQNEFLSS 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,866,386
Number of Sequences: 59808
Number of extensions: 189839
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)