Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0181
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99272-1|CAI79171.1|  615|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z81113-9|CAI79237.1|  615|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate dehydro...    27   3.2  
L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate dehyd...    27   3.2  
Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    26   9.7  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF003141-7|AAK21481.1|  411|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z99272-1|CAI79171.1|  615|Caenorhabditis elegans Hypothetical
           protein T03F6.8 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 114 FFLRQTLPILLPSCDGSYSGAKGSY 188
           FFLR    I L SC  SYSG  G +
Sbjct: 528 FFLRNQKLITLSSCPSSYSGTFGLF 552


>Z81113-9|CAI79237.1|  615|Caenorhabditis elegans Hypothetical
           protein T03F6.8 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 114 FFLRQTLPILLPSCDGSYSGAKGSY 188
           FFLR    I L SC  SYSG  G +
Sbjct: 528 FFLRNQKLITLSSCPSSYSGTFGLF 552


>Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical
           protein F13D12.2 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 84  GGSLVITKIRFFLRQTLPILLPSCDGSYSGAKGSYHI*IWS 206
           G +L   + RF L + L I   SC G   G  G   + +WS
Sbjct: 162 GTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGDSSVAVWS 202


>U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate
           dehydrogenase protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 84  GGSLVITKIRFFLRQTLPILLPSCDGSYSGAKGSYHI*IWS 206
           G +L   + RF L + L I   SC G   G  G   + +WS
Sbjct: 162 GTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGDSSVAVWS 202


>L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate
           dehydrogenase protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 84  GGSLVITKIRFFLRQTLPILLPSCDGSYSGAKGSYHI*IWS 206
           G +L   + RF L + L I   SC G   G  G   + +WS
Sbjct: 162 GTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGDSSVAVWS 202


>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 99  LLATRPRFASEKL*FIIDFCYYLMDVIIHINL 4
           L+  +P +   K+ FI+D CY L   I + +L
Sbjct: 38  LMKNKPEYHLFKIRFIVDICYSLTVSIYYFSL 69


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 258 GKSKKNINFY-NSQDSHPHSQGTTSVGRP 341
           GK KK I+F+ N   SH  S+    +G P
Sbjct: 147 GKKKKKISFFHNLFKSHSESKNQVEIGAP 175


>AF003141-7|AAK21481.1|  411|Caenorhabditis elegans Hypothetical
           protein W02D3.2 protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +3

Query: 99  ITKIRFFLRQTLPILLPSCDGSYSGAKGSYHI*IWSLLVI*YCIYVSTQHPM*GKSKKNI 278
           + KI       +PI+   C G +SGA     I   + LV  Y  +V    P+ GK K+ +
Sbjct: 329 VRKIYKLTNGQIPII--GCGGVFSGADAYEKIRAGASLVQLYSAFVYEGFPVIGKIKREL 386

Query: 279 NFYNSQDSHPH 311
                +D   H
Sbjct: 387 VELLRKDGFSH 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,022,741
Number of Sequences: 27780
Number of extensions: 141809
Number of successful extensions: 260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)