Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0181
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65240.1 68414.m07396 aspartyl protease family protein contai...    27   3.9  
At2g44660.1 68415.m05558 ALG6, ALG8 glycosyltransferase family p...    26   6.8  

>At1g65240.1 68414.m07396 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease profile;
           similar to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]
          Length = 475

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 243 QHPM*GKSKKNINFYNSQDSHPHSQGTTSVGRP 341
           QH   GK KKN+  + S D+  HS+   S+  P
Sbjct: 30  QHKFAGK-KKNLEHFKSHDTRRHSRMLASIDLP 61


>At2g44660.1 68415.m05558 ALG6, ALG8 glycosyltransferase family
           protein similar to SP|P40351 Dolichyl pyrophosphate
           Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC
           2.4.1.-) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) {Saccharomyces cerevisiae};
           contains Pfam profile PF03155: ALG6, ALG8
           glycosyltransferase family
          Length = 383

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 127 RRYRSCCQAVMGPIAVLKDHITFEYGAYLL 216
           +R   C   +  P  ++ DHI F+Y  +LL
Sbjct: 131 KRNLICALVIWSPGLLIVDHIHFQYNGFLL 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,501,516
Number of Sequences: 28952
Number of extensions: 130029
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)