Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0178
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.040
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    29   0.50 
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.6  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 456 RTRASSS*KGRAGTRQSACTAPVPSRKKSTLPS*GSSEGSRAVPGREDHPLPCEGTSRQP 635
           RT A SS + ++ T  S+   P  S   ST P+  S+      P  E+ PLP E +  QP
Sbjct: 461 RTPAKSSEEAKSTTNDSS--PPKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQP 518


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 235 TAQEPF*QQ*WFSRVLRGLLRARRSFRSTRTVLAC 131
           ++ +P   Q W+ RVL GL+ A  +  + R  L C
Sbjct: 167 SSSDPMHPQHWYDRVLEGLVGANENSENNREALIC 201


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = -2

Query: 564 WNLNWEGYFFF---YWVRVRYRHFDGYRHGLFNWNWHVFVYSNRHRIV 430
           WN  W   FF    ++  +   H   +R+G   W W   + S  H ++
Sbjct: 15  WNALWVKTFFQPDEFYQSLEVAHHFIFRYGFLTWEWTSAIRSALHPLI 62


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
 Frame = -2

Query: 705 LLYGIGYRFLYMHG---HWF----ININWDGVVDWYLHRVMDDLLYRVRHVNLHWNLNWE 547
           LL G G+ F Y+     H +    I++  DG+ + +L  +   LL        ++N  W 
Sbjct: 196 LLRGFGFSFFYLQSIVWHLYHSMIISLLPDGIRNLFLKAISYFLLDGSSSKIFYFN--WL 253

Query: 546 GYFFFYWVRVRYRHFDGYRHGLFNWNWHV 460
           G+F  +W    Y+  D     LF  + ++
Sbjct: 254 GFFVVFWNPYWYKMMDNPSWELFGRDQYI 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,379
Number of Sequences: 5004
Number of extensions: 46965
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)