Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0178
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0607 - 5415380-5416289,5416596-5416964,5417866-5418221           29   3.6  
12_02_0643 - 21461123-21461902                                         28   6.4  
03_02_0577 - 9590096-9590432,9590680-9590750,9590890-9590983,959...    28   6.4  
01_01_1143 - 9064210-9065682                                           28   6.4  
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904...    28   8.4  
10_01_0106 + 1317848-1318202,1318208-1318872,1318969-1319850,131...    28   8.4  

>05_01_0607 - 5415380-5416289,5416596-5416964,5417866-5418221
          Length = 544

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +3

Query: 501 QSACTAPVPSRKKSTLPS*GSSEGSRAVPGRE--DHPLPCEGTSRQP---HPSLC**TSA 665
           + A TA  PS +   L   G  EGSR V  R     PLP  G SR P    P+L      
Sbjct: 345 EQAVTATAPSHRSEDLGKGG--EGSRHVSFRHRPSFPLPPGGCSRMPSLYQPNLWPRRGR 402

Query: 666 RAYRETCTLSRREAR 710
           R+  E   L+ R+ R
Sbjct: 403 RSGGEELDLAHRKIR 417


>12_02_0643 - 21461123-21461902
          Length = 259

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +3

Query: 486 RAGTRQSACTAPVPSRKKSTLPS*GSSEGSRAVPGREDHPLPCEGTSRQPHP 641
           R   +++A   P P+ KK    S          P R + P P  G  R P P
Sbjct: 173 RHAAKRAAAVTPPPTTKKKKPQSSRRPPSRTPPPERRESPSPLRGRPRTPPP 224


>03_02_0577 -
           9590096-9590432,9590680-9590750,9590890-9590983,
           9591070-9591137,9591230-9591296,9591436-9591566,
           9591774-9591847,9592017-9592092,9594082-9594147,
           9595432-9595498,9595785-9595861,9596701-9596806,
           9596906-9596979,9597587-9597682,9597781-9597972,
           9598051-9598200
          Length = 581

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 456 RTRASSS*KGRAGTRQSACTAPVPSRKKSTLPS*GSSEGSRAVP 587
           R + S S +    +RQ+   +P+P++ ++ LPS   SE +++ P
Sbjct: 508 RAKQSRSLQAARSSRQAGHESPIPAQLRTRLPSESDSELAKSDP 551


>01_01_1143 - 9064210-9065682
          Length = 490

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 634 GCRLVPSQGNG*SSLPGTAREPSLEP*LGRVLFFLLGT 521
           G  ++PS  +  +SLPG A  P + P LG+ L  +L +
Sbjct: 385 GGHVMPSPVSSLTSLPGVAGGPGVNPALGQALTAILAS 422


>12_02_0388 -
           18486957-18487016,18487286-18489418,18489985-18490484,
           18490728-18490899
          Length = 954

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 678 LYMHGHWFININWDGV--VDWYLHRVMDDLLYRVRHVNLHW 562
           LY+ GH+F ++ W+GV   D + +    DL+  +   N+ W
Sbjct: 745 LYICGHYFTDVLWEGVESQDLFQNLRRLDLISCISLTNISW 785


>10_01_0106 +
           1317848-1318202,1318208-1318872,1318969-1319850,
           1319856-1320200,1320286-1320294
          Length = 751

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 405 TRTGQSARRQSGAC*SIRTRASSS*KGRAGTRQS 506
           TRTGQ AR  S    ++RT+   S KG A   +S
Sbjct: 684 TRTGQKARAASSEEAAVRTKIKESVKGEAKDARS 717


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,875,849
Number of Sequences: 37544
Number of extensions: 334149
Number of successful extensions: 1031
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)