Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0178
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    33   0.27 
U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical pr...    28   0.50 
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U14635-11|AAK84494.2|  500|Caenorhabditis elegans Glutamate-gate...    28   5.7  
U64840-1|AAB04959.2|  484|Caenorhabditis elegans Glutamate-gated...    28   7.6  
AL132948-8|CAC51068.1|  230|Caenorhabditis elegans Hypothetical ...    28   7.6  
AJ243914-1|CAB51708.1|  484|Caenorhabditis elegans Glutamate-gat...    28   7.6  

>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 598 IIHYPVKVPVDNPIPVYVDKPVPV 669
           I H PV VPV  P+P+ V  PVPV
Sbjct: 153 IQHVPVPVPVQVPVPIRVPVPVPV 176


>U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical
           protein T13C2.7 protein.
          Length = 292

 Score = 27.9 bits (59), Expect(2) = 0.50
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 483 GRAGTRQSACTAPVPSRKKSTLPS 554
           G + TRQS C+AP P   +  LP+
Sbjct: 174 GTSSTRQSVCSAPTPHPLEVNLPN 197



 Score = 22.6 bits (46), Expect(2) = 0.50
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +3

Query: 303 STPVPGDKNCSLPGQRIHQSARVHSQAVPGHETRTRTGQSARRQS 437
           S P+  D   S   +         SQ     E  TRTG S+ RQS
Sbjct: 137 SNPLNSDSTRSYKNENSLNVPFTTSQQAIQVEDETRTGTSSTRQS 181


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 392 SRNTYPYRSKCTSTIRCLLEYTNTCQFQLKRPCRYPSKCLYRTRTQ*KK 538
           +R  +PYR +  ST  C  E    C  +      Y +KC+++   + KK
Sbjct: 11  TRLAFPYRREPNSTCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKK 59


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +3

Query: 516 APVPSRKKSTLPS*GSSEGSRAVPGREDHPLPCEGTSRQPHPS 644
           AP P+ +++  P+  + E     P  E+ P P       P P+
Sbjct: 574 APAPAAEETPAPAPAAEETPATAPAAEETPAPAPAADETPAPA 616


>U14635-11|AAK84494.2|  500|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 4 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 369 LWHFDVFFDREVNSFYHRVRVWNRY 295
           LW  D FF  E N +YH +   NR+
Sbjct: 137 LWIPDTFFQNEKNGWYHMLNQENRF 161


>U64840-1|AAB04959.2|  484|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 3 protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 245 KNTYQYRWRKTCPTPLKYRFHT 310
           +N  +YRW+KT P  LK   H+
Sbjct: 186 ENDIEYRWKKTDPVQLKKGLHS 207


>AL132948-8|CAC51068.1|  230|Caenorhabditis elegans Hypothetical
           protein Y39B6A.9 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 133 KRGLSEYYGSYDEHGGGHEEH 195
           K+   EYY   DEHG G E H
Sbjct: 77  KKSGQEYYAKGDEHGHGDEAH 97


>AJ243914-1|CAB51708.1|  484|Caenorhabditis elegans Glutamate-gated
           chloride channelsubunit protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 245 KNTYQYRWRKTCPTPLKYRFHT 310
           +N  +YRW+KT P  LK   H+
Sbjct: 186 ENDIEYRWKKTDPVQLKKGLHS 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,845
Number of Sequences: 27780
Number of extensions: 280541
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)