Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0178
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    29   2.3  
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa...    27   9.3  
At5g23530.1 68418.m02761 expressed protein contains similarity t...    27   9.3  
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    27   9.3  
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    27   9.3  

>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
            Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
            [Bos taurus]
          Length = 897

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 393  HETRTRTGQSARRQSGAC*SIRTRASSS*KGRAGTRQSACTAPVPSRKKSTLPS--*GSS 566
            H     + +  RR+S    S  +   S  K R+  R+S   +PV SR+K + PS    S 
Sbjct: 775  HRRAENSSKDKRRRSPT--SNESSDDSKRKSRS-RRRSVSPSPVRSRRKRSSPSSDESSD 831

Query: 567  EGSRAVPGREDHPLPCEGTSRQPHPS 644
            +  R    +  +  P  G SR+ H S
Sbjct: 832  DSKRKSSSKRKNRSPSPGKSRRRHVS 857


>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 691

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
 Frame = +3

Query: 297 TGSTPVPGDKNCSLPGQRIHQSARVHSQAVPGHE------TRTRTGQSARRQSGAC*SIR 458
           TGS+ V G  N + P +R        S+++PG+            G  AR QS    +  
Sbjct: 344 TGSSLVGGTSNSTAPVERNLHLDETRSRSIPGNTLEIPMFAAPEVGNFARSQSSRNVTNG 403

Query: 459 TRASSS*KGRAGTRQSACTAPVPS 530
              S+S   R G+  S    P PS
Sbjct: 404 NLNSASSVSRTGSTTSVPPPPPPS 427


>At5g23530.1 68418.m02761 expressed protein contains similarity to
           PrMC3 [Pinus radiata] GI:5487873
          Length = 335

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 392 SRNTYPYRSKCTSTIRCLLEYTNTCQFQLKRPCRYPSK 505
           S N YPY + C    R L  Y  +  ++L    RYP++
Sbjct: 102 SPNAYPYDNVCRRFARKLPAYVISVNYRLAPEHRYPAQ 139


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 417 DRYGYVFRDRVRLGNVLWHFDVFFDREVNSFYHRVRVWNRYFNG 286
           +R+      R R+G++  H D + DR++     R R ++RY +G
Sbjct: 138 ERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYMDG 181


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 417 DRYGYVFRDRVRLGNVLWHFDVFFDREVNSFYHRVRVWNRYFNG 286
           +R+      R R+G++  H D + DR++     R R ++RY +G
Sbjct: 138 ERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYMDG 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,567
Number of Sequences: 28952
Number of extensions: 250644
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)