Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0177
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.2  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   6.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   8.4  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 660  ISTFSDQFSRHYGFFLNLNRDVLE 731
            +S+F D FSR +   L+ N+DVLE
Sbjct: 1494 VSSFIDAFSRAFSELLSSNKDVLE 1517


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 609 SIKYFYLQTRTIHWLQLNYVRDFLISFFIFTFLVTFN 499
           S+ +FY +     ++++ Y+  F   FF+F+F   F+
Sbjct: 50  SLLFFYPKRNWWFFIKMRYLSFFFEFFFLFSFAFAFD 86


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 38  MLK*NDLTVCTLEMFFHVIVFAS 106
           ML   D+T+C LEMFF ++  AS
Sbjct: 167 MLAIKDVTLCPLEMFFLLLNNAS 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,707
Number of Sequences: 5004
Number of extensions: 42117
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)