Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0176
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    29   0.70 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    28   1.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   4.9  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    25   8.6  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   8.6  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 59  LHCVPLDAPALSNIEASVCRISLTGHAPIVIASVYLPPDKIVLS 190
           L CV   AP++   E  +C+ + TGH   +++    P  K ++S
Sbjct: 487 LQCVSNVAPSMYK-EGGICKQTFTGHKDFILSVTVSPDGKWIIS 529


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 164 LPPDKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNTHTTTPNG 295
           L P+K+     +E +   G   IL  D     V WN+ T TP G
Sbjct: 212 LEPNKLDEGMFLEGIGAGGIGRILIADFGFSKVVWNSKTATPCG 255


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 47  YRRALHCVPLDAPALSNIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIE 202
           Y   L C       + N ++  C   LTGH+  V+ + + P + +++S+ ++
Sbjct: 107 YPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSEDLIVSASLD 158


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = -3

Query: 348  SGATISKARSSTNASSRLPFGVVVCVFHLTCLQFRSPARMTELPMPSSA-SISLLRTILS 172
            +G    +AR + NA ++   G V C F  TC     PA     P+P    + SLL  +  
Sbjct: 1102 NGNVKEEARRTRNAYTQKS-GEVEC-FMETCTPIAKPAPANWYPVPPPGFNSSLLSRLTQ 1159

Query: 171  GGR*TDAITIGACPVSEIRHTDASMLESAGASSGT 67
              +  D I I A     +  + A + +S G +  T
Sbjct: 1160 SNQSKDKI-IAALAKRNVYKSFAGLYDSKGKNDNT 1193


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 453 QS*IQTIVPSL*SSVALPIPFPSRGLWWIGTRWASAWLNLIH 578
           +S ++++ P+  SSV  PIP PSR      TR   A  +L+H
Sbjct: 11  RSTLRSVAPNPESSVIPPIPLPSRR---YKTRHIDALCSLMH 49


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 119 ISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNTHTTTPNGR 298
           I L  H P   +SV +  D I+ S + +++L    SV    D   +  RW      P   
Sbjct: 52  IELVYH-PERTSSVIMRTDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNT 110

Query: 299 RLDALVD 319
            LDA +D
Sbjct: 111 NLDATMD 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,579
Number of Sequences: 5004
Number of extensions: 52958
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)