Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0176
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1356 - 29536027-29537379                                         29   3.9  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    29   5.2  
12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569     28   6.8  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    28   9.0  
07_01_0028 + 217214-218239                                             28   9.0  
01_06_1027 + 33912773-33912816,33913245-33913401,33913492-339135...    28   9.0  

>06_03_1356 - 29536027-29537379
          Length = 450

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 32  GTVIYYRRALHCVPLDAPALSNIEASVCRISLTGHAPIVIAS 157
           G  I+ +R  HCV +DAP     E +VC ++    AP V  S
Sbjct: 158 GGFIFGQRFCHCV-VDAPGGMQFEKAVCELARGAAAPSVSPS 198


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 562 QADAQRVPIHHSPRDGNG-IGSATELHNDGT 473
           Q   + +P+H  PRDG G  G   E H+ GT
Sbjct: 212 QCKEEPLPLHEPPRDGGGSAGEEEEEHDVGT 242


>12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569
          Length = 411

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 732 SSGNLKR*RKSSATTCFDDLSNVEVMCYVKMS 637
           SS   +  +KSS + CFD+  NV +  Y+K++
Sbjct: 361 SSKKRRTKKKSSCSYCFDETHNVSICQYLKIA 392


>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +2

Query: 119 ISLTGHAPIV-IASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNTHTTTPNG 295
           I L+G   I+ ++  ++PP  +  ++ ++ALL  G   ++ G++    +R   H T    
Sbjct: 170 IELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGGNV-VGALRARGHVTI--- 225

Query: 296 RRLDALVDDLAFDIVAP 346
             L A+V ++ ++ ++P
Sbjct: 226 --LAAVVSNVTYECLSP 240


>07_01_0028 + 217214-218239
          Length = 341

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 69  SHSTPPRFLTSKHQYVESH*LD 134
           S+S PP   T KH +VE H LD
Sbjct: 8   SNSNPPLMSTYKHLFVEQHRLD 29


>01_06_1027 +
           33912773-33912816,33913245-33913401,33913492-33913589,
           33913680-33913775,33914422-33914681,33914778-33915088,
           33915154-33915297,33915452-33915589,33915674-33915721,
           33916328-33916408,33916705-33916864,33917411-33917532
          Length = 552

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 227 VILAGDLNCKHVRWNTHTTTPNGRRLDALVDD 322
           VIL GDLNC H   + H    N R     +++
Sbjct: 440 VILTGDLNCAHQEIDIHDPAGNRRSAGFTIEE 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,591,546
Number of Sequences: 37544
Number of extensions: 415996
Number of successful extensions: 1179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)