Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0176
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    37   0.013
AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical ...    34   0.12 
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    33   0.21 
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   2.6  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   4.6  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   4.6  
Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical p...    28   8.0  
Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    28   8.0  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
 Frame = +2

Query: 149 IASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNTH-TTTPNGRRLDA 310
           I++VY+PP     +   L +D   +    S  I++GD+N  H  W++  +    GR L  
Sbjct: 3   ISNVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAE 62

Query: 311 LVDDLAFDIVAPLTPTHYPLNI--AHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVV 484
           L+ DL  D++      H   +      PDI       ++  + H    + +L SDH P+ 
Sbjct: 63  LI-DLHPDLIIQNEQVHTRADTYSISSPDI--TICTADLATKCH-WSTLYKLGSDHIPMK 118

Query: 485 MKLGRA 502
           +K+ +A
Sbjct: 119 LKINQA 124


>AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.10 protein.
          Length = 250

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 182 VLSSDIEALLGMGSSVILAGDLNCKHVRWNTHTTTPNGRRLDALVDDLAFDIVAPLTPT- 358
           ++S  I + L    S ++ GDLNC     +    TP       L+ D +  ++ P T T 
Sbjct: 4   LISMMIVSFLAPDVSAVIGGDLNCTQYNGSAFVWTPAAVACSNLISDASCAVLYPTTDTL 63

Query: 359 HYPL--NIAHRP 388
            YP   N A RP
Sbjct: 64  GYPAPGNAAGRP 75


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 179 IVLSSDIEALLGMGSSVILAGDLNCKHVRWNTHTTTPNGRRLDALVDDLAFDIV--APLT 352
           I L S I ALL   +S ++ GDLNC     +    TP       ++ D +  ++  AP+ 
Sbjct: 2   IALVSFILALLAPQASAVIGGDLNCTSYNGSAFVWTPAATACSNVISDSSCAVLYPAPVP 61

Query: 353 PTHYP 367
              YP
Sbjct: 62  ADGYP 66


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +2

Query: 146 VIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNTHTTTPNGRRLDALVDDL 325
           V+ S+ L     ++S    +L    +S ++ GDLNC          TP+       + D 
Sbjct: 54  VVLSLLLNKMIALVSLFFVSLFAPEASAVIGGDLNCTTYNGTAFVWTPSAVACSNTISDA 113

Query: 326 AFDIVAPLTPT-HYPL--NIAHRP 388
           +  I+ P T T  +P   N A RP
Sbjct: 114 SCAILYPTTDTLGFPAAGNAAGRP 137


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +2

Query: 182 VLSSDIEALLGMGSSVILAGDLNCKHVRWNTHTTTPNGRRLDALVDDLAFDIVAPLTPT- 358
           ++S  I + L    S ++ GDLNC     +    TP        + D +  ++ P T T 
Sbjct: 4   LISMMIVSFLAPDVSAVIGGDLNCTTFNGSAFVWTPAAVACSNFISDASCAVLYPTTDTL 63

Query: 359 --HYPLNIAHRP 388
               P N A RP
Sbjct: 64  GFPAPGNAAGRP 75


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
 Frame = +2

Query: 2   RNDRLTAR--GGGTVIYYRRALHCVPLDAPALSNIEASVCRI----------SLTGHAPI 145
           RN  L ++  GGG  + ++ +L+    D    ++     C I          + +  +P+
Sbjct: 376 RNPELHSKVSGGGVAVMHKSSLNITLRDINFETHYPKHRCEILAFDIHNAEPASSASSPL 435

Query: 146 VIASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNT 274
            I  +Y PP     +   L + +E+ + + S  ILAGDLN   + W++
Sbjct: 436 SIFLIYRPPCCSVSENAALIAHLESYIPL-SRTILAGDLNFPQINWSS 482


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 226   RASHAEQRLDITA*NDLIRWKINGRDND 143
             R  + E   ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 226   RASHAEQRLDITA*NDLIRWKINGRDND 143
             R  + E   ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914


>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 60  CTASHSTPPRFLTSKHQYVESH*LDTRRSLSRPFI 164
           CT+SH + P+ LT   QY++    D     S PF+
Sbjct: 348 CTSSHHSTPKLLTPSPQYLKDSDDDDNWKNSIPFM 382


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +2

Query: 221 SSVILAGDLNCKHVRWNTHTTTPNGRRLDALVDDLAFDIVAPLTPTHYP 367
           SS ++ GDLNC      +   TP        + D +  ++     T YP
Sbjct: 13  SSAVIGGDLNCTSYNGTSFVYTPAAVACSNAISDASCQVLYAAPDTLYP 61


>Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.13 protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +2

Query: 179 IVLSSDIEALLGMGSSVILAGDLNCKHVRWNTHTTTPNGRRLDALVDDLAFDIV--APLT 352
           I L S I ALL   +S ++ GDLNC                   ++ D +  ++  AP+ 
Sbjct: 2   IALVSFILALLAPQASAVIGGDLNCTSYNGTAFVWNAAATACSNVISDSSCAVLYPAPVA 61

Query: 353 PTHYP 367
              YP
Sbjct: 62  ADGYP 66


>Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.10 protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +2

Query: 179 IVLSSDIEALLGMGSSVILAGDLNCKHVRWNTHTTTPNGRRLDALVDDLAFDIV--APLT 352
           I L S I ALL   +S ++ GDLNC                   ++ D +  ++  AP+ 
Sbjct: 2   IALVSFILALLAPQASAVIGGDLNCTSYNGTAFVWNAAATACSNVISDSSCAVLYPAPVA 61

Query: 353 PTHYP 367
              YP
Sbjct: 62  ADGYP 66


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/73 (23%), Positives = 29/73 (39%)
 Frame = -3

Query: 555 MPSVCQSTTVLVTGTESGARPSFITTGRWSESNSETTSIECKRRVTFFNNAMSSISGRCA 376
           M S   +TT + T  +  A+        W+  N  +T+  C + ++ +N +       CA
Sbjct: 421 MKSTTTATTSMSTTKKVCAKSDLKCANGWTSFNRTSTNPFCFKVISSYNQSYEQSEALCA 480

Query: 375 IFSG**VGVSGAT 337
              G   GV   T
Sbjct: 481 ASGGYLSGVENIT 493


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 291 FGVVVCVFHLTCLQFRSPARMTEL 220
           F + VC F   C+ F++P RMT +
Sbjct: 26  FEIPVCTFGAYCILFKTPERMTSV 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,425
Number of Sequences: 27780
Number of extensions: 310853
Number of successful extensions: 834
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)