Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0176
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 595 PGLYPVFSGYR*SHRHLNVTHHLDIR*VIEASCSGGLPSPLQI 723
           PG   +   Y+   +HLN  H LD R   +A     + S L+I
Sbjct: 286 PGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEI 328


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 513 TESGARPSFITTGRWSESNSETTSIE 436
           T++G  P+F+T   W E  + T S+E
Sbjct: 502 TQTGTGPAFLTIKEWIERGT-TKSME 526


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 370 KYRASPGYTRHSVIKKRNSALTLD 441
           K+  +PGYT   VIK+       D
Sbjct: 213 KFYGTPGYTAPEVIKQNRPTPAAD 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,960
Number of Sequences: 438
Number of extensions: 4203
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)