Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0175
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    29   0.83 
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   1.9  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   2.5  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    27   3.4  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.4  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   4.4  

>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +3

Query: 255 LTHNRVLSKNNNMTESQRPKERIEMITLHKILFVFCFLSLSLNYYISTKPMLEIEN 422
           L H  + SK+ N  +++    R E+  L K L   C + L LNYY+S+  ++ +EN
Sbjct: 132 LKHTHLSSKSQNEKKARVKVFRQEIWAL-KTLSHPCVVQL-LNYYVSSAELILVEN 185


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
 Frame = +3

Query: 246 NSALTHNRVLSKNNNMTESQRPKERIEMITLHKILFVFCFLSLSLNYYISTKPMLEIENP 425
           NS+L      + N  + E ++ ++++E     +I  +  FL  SL     T   L+IE+P
Sbjct: 57  NSSLFELFTTAMNAQLHEMEQCQKKLEDDCQQRIDSIR-FLVSSLKLTDDTSS-LKIESP 114

Query: 426 TFSLIQPNETITSKFSDNYDQ-LIDIKKFSFKINPKPCKRYPERF--STYDNSFL 581
               +     +  ++   YDQ L  IK+   K+    C R    F    ++NSFL
Sbjct: 115 LIQCLNRLSMVEGQYMAQYDQKLSTIKEMYHKLE-SYCNRLGSPFVLPDFENSFL 168


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 228 IYSCLRNSALTHNRVLSKNNNMTE 299
           IY CL+NSA+  NR +S + N  E
Sbjct: 447 IYICLKNSAVQSNRNVSPSANHNE 470


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 360 CFLSLSLNYYISTKPMLEIENPTFSLIQPNETITSKFSDNYDQ 488
           C   LSLN++    P L + + +   +  +  +     DN+DQ
Sbjct: 8   CKRGLSLNFFEEDGPSLRLNSDSLDFLARDFKVEGMSQDNFDQ 50


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 152  VFLNIISKFDCYCDCHTIIF 93
            +FL  + +F  YCD H+I F
Sbjct: 1132 IFLENLKEFSVYCDAHSIGF 1151


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = +3

Query: 420 NPTFSLIQPNETITSKFSDNYDQLIDIKKFSFKIN----PKPC---KRYPERFSTYDNSF 578
           NP   ++ PN ++ S  +D+ ++LI+ +K SF+ N     + C    R P   S  DNS 
Sbjct: 7   NPKGLVLNPNASVKSSDNDHKEELINNQK-SFESNVEAFMEQCAHMNRRPAWISDLDNSS 65

Query: 579 LQ 584
           L+
Sbjct: 66  LE 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,334
Number of Sequences: 5004
Number of extensions: 60559
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)