Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0175
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24592| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20) 34 0.094
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 33 0.29
SB_48716| Best HMM Match : Galactosyl_T (HMM E-Value=1.2) 31 0.87
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37) 31 0.87
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 29 2.7
SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24) 29 2.7
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25) 29 3.5
SB_43457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3) 29 4.7
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 28 6.2
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26) 28 6.2
SB_56622| Best HMM Match : ImpA-rel_N (HMM E-Value=1) 28 8.1
SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23) 28 8.1
SB_30881| Best HMM Match : NAD_binding_3 (HMM E-Value=0.91) 28 8.1
SB_534| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_24592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 535 VNVTQKGFLLMIIVSSNPLNYENRLVIRKTWGQT 636
V V + F L+++V+S+P ENR IR+TWG +
Sbjct: 62 VGVKNETFYLVVVVNSDPRKLENRQTIRETWGSS 95
>SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 34.7 bits (76), Expect = 0.071
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Frame = +1
Query: 508 SHSKSILNHVNVTQKGFLLMIIVSSNPLNYENRLVIRKTWGQTD---------ESTNIVF 660
S+ K I+ L+I+V S N+E R IRK+WG+ D ES ++F
Sbjct: 130 SNKKLIVTPQACPNDDLYLLILVISTGRNFEARKAIRKSWGRADTSKRNVTTPESVRVIF 189
Query: 661 LVGETD 678
+VG +
Sbjct: 190 VVGSDE 195
>SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)
Length = 767
Score = 34.3 bits (75), Expect = 0.094
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Frame = +1
Query: 508 SHSKSILNHVNVTQKGFLLMIIVSSNPLNYENRLVIRKTWGQTD---------ESTNIVF 660
S+ K I+ L+I+V S N+E R IRK+WG+ D ES ++F
Sbjct: 130 SNKKLIVTPQACPNDDXYLLILVISTGRNFEARKAIRKSWGRADTSQKNVTTPESVRVIF 189
Query: 661 LVGETD 678
+VG +
Sbjct: 190 VVGSDE 195
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 535 VNVTQKGFLLMIIVSSNPLNYENRLVIRKTWG 630
V + K F L ++V+++P ENR IR +WG
Sbjct: 465 VGIENKWFYLAVVVNADPRKPENRKAIRGSWG 496
>SB_48716| Best HMM Match : Galactosyl_T (HMM E-Value=1.2)
Length = 323
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 541 VTQKGFLLMIIVSSNPLNYENRLVIRKTW 627
+T K FL+ I++++ P N E R+ +RKTW
Sbjct: 68 ITGKVFLI-ILINTIPKNVERRMTLRKTW 95
>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
Length = 646
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTDESTNIVFLVGETDN 681
L+I+++S+P R +IRKTW T +S + L ++ N
Sbjct: 378 LLILITSHPKASSRRDLIRKTWAGTSKSKYLTGLPAKSTN 417
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTD--ESTNIVFLVG 669
L+++V ++P R VIR+TWG ST VF++G
Sbjct: 55 LLVLVLTSPGGRLQRDVIRETWGSASLAPSTRFVFVLG 92
>SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24)
Length = 683
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 517 KSILNHVNVTQKGFLLMIIVSSNPLNYENRLVIRKTW 627
K +L +N + L+++V S P ++ R +IR+TW
Sbjct: 79 KILLPEINQKRGELCLLVLVISTPKSHGRREIIRQTW 115
>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTDEST---NIVFLVGETDN 681
L+I+VSS N R IR TWG T VFL+G DN
Sbjct: 69 LLILVSSYVGNAARRKEIRFTWGTDFLPTPRWRTVFLIGANDN 111
>SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)
Length = 383
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTDESTNI----VFLVGETDN 681
L+I+VSS N R IR TWG TD ++ VFL+G DN
Sbjct: 140 LLILVSSYVGNAARRKEIRFTWG-TDFLPSLRWRTVFLIGANDN 182
>SB_43457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 480 YDQLIDIKKFSFKINPKPCKRYPERFSTYDNSF 578
Y + SFK+ P K YP F Y +SF
Sbjct: 236 YSSSFKVYPSSFKVYPSSFKMYPSSFKVYPHSF 268
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 480 YDQLIDIKKFSFKINPKPCKRYPERFSTYDNSF 578
Y + SFK+ P K YP F Y +SF
Sbjct: 229 YPSFFKVYSSSFKVYPSSFKVYPSSFKMYPSSF 261
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 510 SFKINPKPCKRYPERFSTYDNSF 578
SFK+ P K YP F Y +SF
Sbjct: 281 SFKVYPSSFKMYPSSFKVYPHSF 303
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +3
Query: 411 EIENPTFSLIQPNETITSKFSDNYDQLIDIKKFSFKINPKPCKRYPERFSTYDNSF 578
++ P+F + + + Y + SFK++P K Y F Y +SF
Sbjct: 269 KVHPPSFKVYSSSFKVYPSSFKMYPSSFKVYPHSFKVHPPSFKVYSSSFKVYPSSF 324
>SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)
Length = 280
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 447 NETITSKFSDNYDQLIDIKKFS---FKINPKPCKRYPERFSTYDNSFLQPLEL 596
+ETI + S N +D S FK+N + CK FST ++F +P+++
Sbjct: 75 SETIARESSSNIQAAVDALSASADKFKLNERKCKELRIGFSTKPSNF-EPIQV 126
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +3
Query: 495 DIKKFS----FKINPKPCKRYPERFSTYDNSFLQPLEL 596
DI +F+ ++NPK CK F Y S LQPL +
Sbjct: 118 DISEFAATRGMRLNPKKCKEMRINFLEYQCSTLQPLAI 155
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 228 IYSCLRNSALTHNRVLSKNNNMTESQRPKERIEMITLHKILFVFC---FLSL-SLNYY 389
I+ L+ L R+ SK ++ E K+ +M+ + ++FV C FL++ SL Y+
Sbjct: 210 IFKSLKKHQLARARLASKTPSLKEGFNEKKITKMLAIVTLIFVACYFPFLAVRSLRYF 267
>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = +1
Query: 514 SKSILNHVNVTQKGFLLMIIVS----SNPLNYENRLVIRKTWG--QTDESTNIVFLVGET 675
++S ++VN QKG +L++ ++ N +N E + +T+ + D+S N+ L G+
Sbjct: 23 ARSATSYVNTEQKGKVLVVSIARPEKRNAINSETADQLSETFRHFEIDDSVNVAVLTGKG 82
Query: 676 DN 681
N
Sbjct: 83 GN 84
>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
Length = 308
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 562 LMIIVSSNPLNYENRLVIRKTWGQ---TDESTNIVFLVGETDN 681
L+I+VSS N R IR TWG VFL+G DN
Sbjct: 65 LLILVSSYVGNAARRKEIRFTWGTDFLPSPRWRTVFLIGANDN 107
>SB_56622| Best HMM Match : ImpA-rel_N (HMM E-Value=1)
Length = 529
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +3
Query: 456 ITSKFSDNYDQLI--DIKKFS----FKINPKPCKRYPERFSTYDNSFLQPLEL 596
I + S +Y Q I DIK+++ ++NPK CK F Y +S Q L L
Sbjct: 78 IVPRCSPSYIQFIVNDIKEYASSRGMRLNPKKCKELQINFLKYQHSVPQRLIL 130
>SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 516 KINPKPCKRYPERFSTYDNSFLQPLEL 596
++NPK CK F Y S LQPL +
Sbjct: 2 RLNPKKCKEMGINFLEYQCSTLQPLAI 28
>SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23)
Length = 396
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTDESTN 651
L+I V S+P ++ R IR +WG+ + S N
Sbjct: 89 LLIFVHSSPESFLRRESIRLSWGRQENSIN 118
>SB_30881| Best HMM Match : NAD_binding_3 (HMM E-Value=0.91)
Length = 337
Score = 27.9 bits (59), Expect = 8.1
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Frame = +3
Query: 273 LSKNNNMTESQRPKERIEMITLHKILFVFCFLSLSLNYYISTKPMLEIENPTFSLIQPNE 452
L K M ES R +R E+ K L FC L + L+ S + E E NE
Sbjct: 15 LKKVMEMIESSRSSDRNEIYP--KALETFCHLEIHLSSKTSADALAETEGEKRQRDDDNE 72
Query: 453 TITSKFSDNYDQLIDIKKFSFK---INPKPCKRYP 548
T +D Q +++ F +K + P C P
Sbjct: 73 T-----ADMARQCLEVLLFYYKSLDLPPPSCTGTP 102
>SB_534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 948
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +3
Query: 456 ITSKFSDNYDQLI--DIKKFS----FKINPKPCKRYPERFSTYDNSFLQPLEL 596
I + S +Y Q I DIK+++ ++NPK CK F Y +S Q L L
Sbjct: 267 IVPRCSPSYIQFIVNDIKEYASSRGMRLNPKKCKELQINFLKYQHSVPQRLIL 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,624,886
Number of Sequences: 59808
Number of extensions: 372255
Number of successful extensions: 920
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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