Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0175
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z81502-6|CAB04109.3|  345|Caenorhabditis elegans Hypothetical pr...    32   0.44 
AY533304-1|AAS21306.1|  359|Caenorhabditis elegans BRE-2 protein.      29   2.4  
AL110487-12|CAB54430.2|  308|Caenorhabditis elegans Hypothetical...    29   2.4  
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z83239-1|CAB05807.1|  325|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81078-1|CAB03075.3|  441|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81502-4|CAB04107.2|  357|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    28   7.2  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        28   7.2  
AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z68752-6|CAD27607.1|  322|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AY038065-1|AAK72094.1|  322|Caenorhabditis elegans beta 1,3-gala...    27   9.5  
AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +3

Query: 348 LFVFCFLSLSLNYYISTKPMLEIENPTFSLIQPNETITSKFSDNYDQLIDIKKFSFKIN 524
           +F FCF SL L YY ST   L I N TFS    N     + +D+   +I+ ++F   I+
Sbjct: 53  MFSFCFFSLLLLYYSST-TFLAIRNITFSFYGENYGKAPRIADHV--VINCERFYMAIS 108


>Z81502-6|CAB04109.3|  345|Caenorhabditis elegans Hypothetical
           protein F14B6.6a protein.
          Length = 345

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTDESTNIVFLVG 669
           +++IV S P ++  R VIR TW   +     +FL+G
Sbjct: 83  ILLIVLSRPDDFSRRNVIRHTWMSQENEIKYLFLIG 118


>AY533304-1|AAS21306.1|  359|Caenorhabditis elegans BRE-2 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTDES 645
           +++IVSSN  N+  R ++RKTW   + S
Sbjct: 88  ILMIVSSNCDNFARRNILRKTWMNPENS 115


>AL110487-12|CAB54430.2|  308|Caenorhabditis elegans Hypothetical
           protein Y39E4B.9 protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTDES 645
           +++IVSSN  N+  R ++RKTW   + S
Sbjct: 88  ILMIVSSNCDNFARRNILRKTWMNPENS 115


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 255 LTHNRVLSKNNNMTESQRPKERIEMITLHKILFVFCFLSLSLNYYIS 395
           +T + VL+    + +  RPK  I +I +   +F+  FLS+ + YYI+
Sbjct: 73  ITLSLVLAMYYTVYQLDRPKSNIPLINI--FVFLIIFLSMCMLYYIT 117


>Z83239-1|CAB05807.1|  325|Caenorhabditis elegans Hypothetical
           protein T09F5.1 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 562 LMIIVSSNPLNYENRLVIRKTW-GQTDESTNIVFLVG 669
           +++I +S P ++  R  IRKTW  Q        F+VG
Sbjct: 81  ILLIATSRPDDFSRRNAIRKTWMNQKTNQITSFFMVG 117


>Z81078-1|CAB03075.3|  441|Caenorhabditis elegans Hypothetical
           protein F36H2.2 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 354 VFCFLSLSLNYYIST-KPMLEIENPTFSLIQPNETITSKFSDNYDQLID 497
           + CF+SL+  YY++T  P +  ++ +  LI+  E ++ +   N+   ID
Sbjct: 205 IMCFISLATYYYLTTLTPPMITDDGSEGLIENEEEVSIEAQANHFPPID 253


>Z81502-4|CAB04107.2|  357|Caenorhabditis elegans Hypothetical
           protein F14B6.4 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
 Frame = +1

Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTDESTNI-------VFLVGETD 678
           +++IV+S   ++  R V+RKTW   + S  I       +FLVG TD
Sbjct: 90  ILMIVASRTDSFARRNVLRKTWMNPENSEIIKDGRMKALFLVGMTD 135


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 382  FSDKDKKQKTNSILCRVIISILSFGR*DSVILLFLD 275
            F D ++K+K   + CR++IS L  G+  + I   +D
Sbjct: 1341 FDDPEEKEKAGELKCRLLISKLKKGKPPAAINTVVD 1376


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 382  FSDKDKKQKTNSILCRVIISILSFGR*DSVILLFLD 275
            F D ++K+K   + CR++IS L  G+  + I   +D
Sbjct: 1341 FDDPEEKEKAGELKCRLLISKLKKGKPPAAINTVVD 1376


>AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical
           protein F53C3.6a protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 391 YRQNLC*KSKTQLFL*FNLMKRSLPNLVIITTS*LI*RNSHSKSILNHVNVTQKGF 558
           +RQN+   S T     F+ M R++  ++I   S +I  N+H     +HVN T+K +
Sbjct: 81  FRQNVFHTSSTSRTFVFSPMTRTI--VIISPASPMIYENNHYYWAGHHVNTTEKPY 134


>Z68752-6|CAD27607.1|  322|Caenorhabditis elegans Hypothetical
           protein T12G3.8 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +1

Query: 559 LLMIIVSSNPLNYENRLVIRKTWG--QTDESTNI--VFLVGETDN 681
           +++II+ S+  N   R  +RKTWG  +  +   +  +F+VG  +N
Sbjct: 78  IIIIIIKSSAKNGPMRESVRKTWGVFRMIDGVEVMPIFIVGRVEN 122


>AY038065-1|AAK72094.1|  322|Caenorhabditis elegans beta
           1,3-galactosyltransferaseBRE-5 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +1

Query: 559 LLMIIVSSNPLNYENRLVIRKTWG--QTDESTNI--VFLVGETDN 681
           +++II+ S+  N   R  +RKTWG  +  +   +  +F+VG  +N
Sbjct: 78  IIIIIIKSSAKNGPMRESVRKTWGVFRMIDGVEVMPIFIVGRVEN 122


>AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical
           protein H17B01.4a protein.
          Length = 946

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = +3

Query: 216 QLEGIYSCLRNSALTHNRVLSKNNNM-------TESQRPKERIEMITLHKILFVFCFLSL 374
           QL+G+ S + ++ LTHN V+   N M        E   P +R+ ++ +H    V+  + +
Sbjct: 540 QLDGLASVVFSNKLTHNGVIVSFNPMVGKVVSRNELGYPVKRLSLLPVHTHKHVYPVMLI 599

Query: 375 SLNYYISTKPMLEIE 419
             N  I   P +  E
Sbjct: 600 GKNEEIKIFPSITPE 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,564
Number of Sequences: 27780
Number of extensions: 318562
Number of successful extensions: 727
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)