Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0175
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 429 FSLIQPNETITSKFSDNYDQLIDIKKFSFKINPKPCK 539
           + L   N+    K+  N +  + IKK + K NP   K
Sbjct: 153 YDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNPAKVK 189


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 382 FSDKDKKQKTNSILCRVIISIL 317
           F  KDK +K N   CR +  IL
Sbjct: 595 FDIKDKNKKVNVAGCRCVKGIL 616


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 380 KLLYIDKTYARNRKPNFFSD 439
           +LL+I+  Y    +PN F+D
Sbjct: 620 ELLFINNNYINLVRPNTFTD 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,495
Number of Sequences: 438
Number of extensions: 3904
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)