Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0175
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof...    32   0.41 
At1g69170.2 68414.m07914 squamosa promoter-binding protein-like ...    29   2.9  
At1g69170.1 68414.m07913 squamosa promoter-binding protein-like ...    29   2.9  
At4g18200.1 68417.m02705 purine permease family protein similar ...    28   6.7  
At1g26810.1 68414.m03267 galactosyltransferase family protein co...    27   8.8  

>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 366

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
 Frame = +3

Query: 372 LSLNYYISTKPMLEIENPTFSLIQPNETITSKFSDNYDQLIDIKKFSFKINPKPCKRYPE 551
           L++   ++   +L I+NP  +L  P + ITS+  D +D+L+ +++ S K NP P  ++P+
Sbjct: 25  LAITVAVTQPAVLIIQNPNNNLTSP-QVITSQPLD-HDELL-LRQAS-KANPNPSPKFPK 80

Query: 552 R----FSTYDNSFLQPL-EL-*KQACHQKNV 626
           +    F T ++  L PL EL   Q+ H K++
Sbjct: 81  KLAFMFLTTNSLPLAPLWELFFNQSSHHKSL 111


>At1g69170.2 68414.m07914 squamosa promoter-binding protein-like 6
           (SPL6) identical to squamosa promoter binding
           protein-like 6 [Arabidopsis thaliana] GI:5931683;
           contains Pfam profile PF03110: SBP domain
          Length = 405

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 369 SLSLNYYISTKPMLEIENPTFSLIQPNETITSKFSDNYDQL 491
           +LSL    S + + +  N TFS+ QPN+ +    S +Y Q+
Sbjct: 304 ALSLLSAQSQQHLSKFPNTTFSITQPNQNLNHSSSTDYHQM 344


>At1g69170.1 68414.m07913 squamosa promoter-binding protein-like 6
           (SPL6) identical to squamosa promoter binding
           protein-like 6 [Arabidopsis thaliana] GI:5931683;
           contains Pfam profile PF03110: SBP domain
          Length = 405

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 369 SLSLNYYISTKPMLEIENPTFSLIQPNETITSKFSDNYDQL 491
           +LSL    S + + +  N TFS+ QPN+ +    S +Y Q+
Sbjct: 304 ALSLLSAQSQQHLSKFPNTTFSITQPNQNLNHSSSTDYHQM 344


>At4g18200.1 68417.m02705 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 1128

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +3

Query: 267 RVLSKNNNMTESQRPKERIEMITLHKILFVFCFLSLSLNYYISTKPMLEIENPTFSLIQP 446
           R  S+  N   ++    +    T+   +++   L +S N Y+S+  +L +   TFSLI  
Sbjct: 104 RFFSQTKNPKPTEADFRKFSSFTILGSVYIVTGLLVSANSYMSSVGLLYLPVSTFSLILA 163

Query: 447 NETITSKFSDNYDQLIDIKKFS-FKIN 524
           ++   + F   +   ++ +KF+ F +N
Sbjct: 164 SQLAFTAF---FSYFLNSQKFTPFIVN 187


>At1g26810.1 68414.m03267 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 643

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 562 LMIIVSSNPLNYENRLVIRKTWGQTDE 642
           L+I V S   N++ R+ +R+TW Q D+
Sbjct: 394 LVIGVFSTANNFKRRMAVRRTWMQYDD 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,986
Number of Sequences: 28952
Number of extensions: 280327
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)