Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0170
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   2.0  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    25   4.5  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    24   6.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   7.9  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -1

Query: 285  LVLANNSEPHC 253
            +VLAN+SEPHC
Sbjct: 2113 MVLANDSEPHC 2123


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 230 RGRPTGWKQCGSLLLARTR 286
           +G PT WKQC  +LL R R
Sbjct: 482 QGTPTHWKQC--VLLLRNR 498


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 221 LEARGRPTGWKQCGSLLLARTRDPMTVY 304
           LEARG+     Q G  +L++ R+  + Y
Sbjct: 151 LEARGKTYSPSQIGGFILSKMRETASTY 178


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 314  SFFCKQSWGLLFLP 273
            SF CK+ WG L +P
Sbjct: 2148 SFACKKRWGFLQMP 2161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,915
Number of Sequences: 5004
Number of extensions: 24615
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)