Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0170
         (351 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17506| Best HMM Match : DUF755 (HMM E-Value=0.72)                   30   0.46 
SB_39510| Best HMM Match : VWA (HMM E-Value=0)                         27   4.3  
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         27   4.3  
SB_28629| Best HMM Match : FCH (HMM E-Value=5.2e-06)                   26   7.5  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_21478| Best HMM Match : Branch (HMM E-Value=0)                      26   9.9  
SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.9  
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          26   9.9  

>SB_17506| Best HMM Match : DUF755 (HMM E-Value=0.72)
          Length = 256

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +2

Query: 173 LAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRDPMTVYRKMKSQSVSWSIDC 346
           L  V+ AQS +R  K  +   +  G ++C  +L A  R      RK K + VS  IDC
Sbjct: 183 LLWVKAAQSELRSAKHYKDLVKDLGVQECDGVLSASKRKRKR-KRKRKRKKVSKEIDC 239


>SB_39510| Best HMM Match : VWA (HMM E-Value=0)
          Length = 705

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 168 GLNAPTRLDECQRLPCTH 115
           G N  T +DEC  LPC H
Sbjct: 71  GDNCETGIDECLNLPCKH 88


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 168 GLNAPTRLDECQRLPCTH 115
           G+N  TR+D C   PC H
Sbjct: 392 GINCETRVDSCASNPCLH 409


>SB_28629| Best HMM Match : FCH (HMM E-Value=5.2e-06)
          Length = 317

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 291 GSLVLANNSEPHCFHPVGLPRASSSLRSLIEDWAS 187
           GSL+ A  S  H F      +AS +L++  +DWA+
Sbjct: 256 GSLLAAALSVTHAFPSELFGKASMTLKAAAKDWAN 290


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 234  VGPQGGNNVVHYYWQEQETP 293
            V PQ G  VVH  W E   P
Sbjct: 1088 VSPQPGGTVVHVTWDEPPVP 1107


>SB_21478| Best HMM Match : Branch (HMM E-Value=0)
          Length = 666

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 230 RGRPTGWKQCGSLLLARTRDPMTVYRKMKSQS 325
           R   T W +C SL+   TR     YR   SQS
Sbjct: 314 RPNSTAWARCQSLIHGSTRPSDGGYRLQNSQS 345


>SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 117 GCTGVAGIHQALLEHSSQHLLR 182
           GC+     HQ L  HS  H+LR
Sbjct: 165 GCSKAFSTHQGLKSHSKVHVLR 186


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 225 SSSLRSLIEDWASLT*ASV-GLNAPTRLDECQRLPCTH 115
           +++ + LI D++      + G    T +DECQ  PC H
Sbjct: 151 NATCQDLINDFSCQCPQGITGQTCNTDIDECQSSPCKH 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,685,008
Number of Sequences: 59808
Number of extensions: 189100
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)