Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0170
         (351 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             24   1.9  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   2.5  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    22   5.8  

>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 PSPQLGFLRSLRLVVGPQGGNNVVH 266
           P+P L FLR  ++V   + G  +VH
Sbjct: 847 PAPFLQFLRRTKVVTPSESGPIIVH 871


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 275 PIIVNHIVSTLWAYHEPQAP*EA*LRTGQASPEQVLA*MLQQGLMNASDSRAP 117
           P  +  I+  L+  HEPQ P +   R     P  + A  +Q+   +    +AP
Sbjct: 360 PTALKTIIEQLFPNHEPQTPRDI-SRNPDVEPVSISADEIQKAADHLKLGKAP 411


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 275 PIIVNHIVSTLWAYHEP 225
           P+++  +VST+++ H P
Sbjct: 381 PVVLKSVVSTMFSDHSP 397


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,760
Number of Sequences: 2352
Number of extensions: 6498
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 25364985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)