Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0170
         (351 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF111858-1|AAF21941.1|  866|Homo sapiens dimethylglycine dehydro...    38   0.009
BC150251-1|AAI50252.1|  878|Homo sapiens pyruvate dehydrogenase ...    29   5.5  
AB082521-1|BAC02699.1|  883|Homo sapiens KIAA1990 protein protein.     29   5.5  

>AF111858-1|AAF21941.1|  866|Homo sapiens dimethylglycine
           dehydrogenase precursor protein.
          Length = 866

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 125 GSRWHSSSLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLART 283
           GS WH++ L   F P +   ++   SI+L ++LE   G+  G+ Q GS+ LA T
Sbjct: 87  GSTWHAAGLTTYFHPGINLKKIHYDSIKLYEKLEEETGQVVGFHQPGSIRLATT 140


>BC150251-1|AAI50252.1|  878|Homo sapiens pyruvate dehydrogenase
           phosphatase regulatory subunit protein.
          Length = 878

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 125 GSRWHSSSLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDPMTV 301
           GS    + ++   +    + ++A  S +L  +LE   G  TG+ + GS+ LA+T+D +  
Sbjct: 79  GSTRFCAGILSTARHLTIEQKMADYSNKLYYQLEQETGIQTGYTRTGSIFLAQTQDRLIS 138

Query: 302 YRKMKS 319
            +++ +
Sbjct: 139 LKRINA 144


>AB082521-1|BAC02699.1|  883|Homo sapiens KIAA1990 protein protein.
          Length = 883

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 125 GSRWHSSSLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDPMTV 301
           GS    + ++   +    + ++A  S +L  +LE   G  TG+ + GS+ LA+T+D +  
Sbjct: 84  GSTRFCAGILSTARHLTIEQKMADYSNKLYYQLEQETGIQTGYTRTGSIFLAQTQDRLIS 143

Query: 302 YRKMKS 319
            +++ +
Sbjct: 144 LKRINA 149


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,400,449
Number of Sequences: 237096
Number of extensions: 1075808
Number of successful extensions: 2120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2120
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)