Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0170
(351 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical... 29 1.2
AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical... 29 1.2
L23645-10|AAK26135.2| 300|Caenorhabditis elegans Hypothetical p... 27 2.9
Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical pr... 27 5.0
AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic catio... 27 5.0
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z98877-1|CAB11569.2| 343|Caenorhabditis elegans Hypothetical pr... 26 8.7
U40421-2|AAA81438.1| 453|Caenorhabditis elegans Hypothetical pr... 26 8.7
AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical ... 26 8.7
>AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical
protein Y37E3.17a protein.
Length = 830
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 125 GSRWHSSSLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDPMTV 301
G+ +HS LV A P + SI L +LEA G ++ G++ LA +
Sbjct: 68 GTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLAE 127
Query: 302 YRK 310
+RK
Sbjct: 128 FRK 130
>AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical
protein Y37E3.17b protein.
Length = 837
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 125 GSRWHSSSLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDPMTV 301
G+ +HS LV A P + SI L +LEA G ++ G++ LA +
Sbjct: 75 GTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLAE 134
Query: 302 YRK 310
+RK
Sbjct: 135 FRK 137
>L23645-10|AAK26135.2| 300|Caenorhabditis elegans Hypothetical
protein F54F2.9 protein.
Length = 300
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 197 SSIRLLKELEARGRPTGWKQCGSLLLARTRDPMTVYRKMK 316
S +RL E G P W+Q G +L D + + KMK
Sbjct: 175 SLVRLSTEKYPAGTPNRWEQMGRVLNRSAEDVIAMAGKMK 214
>Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical
protein ZK455.8b protein.
Length = 414
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -2
Query: 308 FCKQSWGLLFLPIIVNHIVSTLWAYHEPQAP 216
+ +SW ++ L ++ HI+S + Y P++P
Sbjct: 127 YLTKSWTMIHLICVLLHIISLMLLYFLPESP 157
>Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical
protein ZK455.8a protein.
Length = 757
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -2
Query: 308 FCKQSWGLLFLPIIVNHIVSTLWAYHEPQAP 216
+ +SW ++ L ++ HI+S + Y P++P
Sbjct: 415 YLTKSWTMIHLICVLLHIISLMLLYFLPESP 445
>AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic cation
transporter protein.
Length = 414
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -2
Query: 308 FCKQSWGLLFLPIIVNHIVSTLWAYHEPQAP 216
+ +SW ++ L ++ HI+S + Y P++P
Sbjct: 127 YLTKSWTMIHLICVLLHIISLMLLYFLPESP 157
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 110 EKWVHGSRWHSSSLVG 157
+KW+ RWHSSS +G
Sbjct: 359 DKWMPTHRWHSSSGIG 374
>Z98877-1|CAB11569.2| 343|Caenorhabditis elegans Hypothetical
protein Y69H2.1 protein.
Length = 343
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 338 CSTIQTDFSFFCKQSWGLLFLPIIVNHI 255
CS ++ F C QS GL+ +PI ++HI
Sbjct: 122 CSLLR-HFVLACFQSAGLITVPIAIDHI 148
>U40421-2|AAA81438.1| 453|Caenorhabditis elegans Hypothetical
protein C02B8.5 protein.
Length = 453
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 139 FIKPCWSIQANTCSGEACP 195
++ CWS NT S + CP
Sbjct: 71 YVIDCWSTMYNTASKDVCP 89
>AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical
protein Y6D1A.2 protein.
Length = 272
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 188 LAQSSIRLLKELEARGRPTGWKQC 259
L Q ++ L KE E+ G+P W+ C
Sbjct: 160 LEQVALALKKEEESDGQPKPWRMC 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,000,366
Number of Sequences: 27780
Number of extensions: 142440
Number of successful extensions: 322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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