Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0170
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   0.20 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   2.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   9.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   9.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 25.4 bits (53), Expect = 0.20
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 147 LDECQRLPCTHFSQY 103
           +DECQ  P  HF QY
Sbjct: 26  VDECQATPVIHFLQY 40


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +2

Query: 290 PMTVYRKMKSQSVSWSIDCD 349
           PM V      + + W I CD
Sbjct: 111 PMLVISSFMERMIGWEIGCD 130


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +2

Query: 290 PMTVYRKMKSQSVSWSIDCD 349
           PM V      + + W I CD
Sbjct: 111 PMLVISSFMERMIGWEIGCD 130


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 294 MGSLVLANNSEPHCFHPVGLPRASSSLRSLIE 199
           M +L +    E    HPVG+      L+++I+
Sbjct: 443 MSALRILEKHELANVHPVGINPGKMQLKNIIK 474


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 255 NVVHYYWQEQETP*LFTEK*KV 320
           NV+H ++Q      +FT++ KV
Sbjct: 2   NVLHIHYQHYHITPVFTKQKKV 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,700
Number of Sequences: 438
Number of extensions: 1834
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)