Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0170
         (351 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62570.1 68418.m07852 calmodulin-binding protein similar to c...    28   1.5  
At5g63710.1 68418.m07997 leucine-rich repeat transmembrane prote...    28   2.0  
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi...    27   3.5  
At4g34370.1 68417.m04883 IBR domain-containing protein similar t...    27   4.6  
At3g12570.3 68416.m01566 expressed protein                             26   6.1  
At3g12570.2 68416.m01565 expressed protein                             26   6.1  
At3g12570.1 68416.m01564 expressed protein                             26   6.1  
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR...    26   8.1  
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR...    26   8.1  

>At5g62570.1 68418.m07852 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 487

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 258 HCFHPVGLPRASSSLRSLIEDWASLT*ASVGLNAPTR 148
           +C H +GL    S L+S ++D+ S   ASVG  A ++
Sbjct: 428 NCSHILGLEEPQSELQSALDDFMSQKNASVGGKAHSK 464


>At5g63710.1 68418.m07997 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 614

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 139 FIKPCWSIQANTCSGEACPVLN*AS*GA*GS 231
           F+ PC+S    TC G++   LN AS G  G+
Sbjct: 77  FVSPCYSWSYVTCRGQSVVALNLASSGFTGT 107


>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 695

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 203 IRLLKELEARGRPTGWKQCGSLLLAR 280
           +RLL+   +R R T W+Q   LLL +
Sbjct: 30  VRLLQSCSSRNRETLWRQTNGLLLKK 55


>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
           SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
           melanogaster}; contains Pfam profile PF01485: IBR domain
          Length = 597

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 258 VVHYYWQEQETP*LFTEK*KVSLYRGA 338
           ++HY W  ++   +F EK K SL+ GA
Sbjct: 75  LIHYQWDVEKLFAVFVEKGKDSLFSGA 101


>At3g12570.3 68416.m01566 expressed protein
          Length = 489

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 241 HRVETMWFTIIGKNKRPHDCL 303
           H V+T+   + G NKR  DCL
Sbjct: 300 HAVDTVEVQLAGSNKRKRDCL 320


>At3g12570.2 68416.m01565 expressed protein
          Length = 489

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 241 HRVETMWFTIIGKNKRPHDCL 303
           H V+T+   + G NKR  DCL
Sbjct: 300 HAVDTVEVQLAGSNKRKRDCL 320


>At3g12570.1 68416.m01564 expressed protein
          Length = 489

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 241 HRVETMWFTIIGKNKRPHDCL 303
           H V+T+   + G NKR  DCL
Sbjct: 300 HAVDTVEVQLAGSNKRKRDCL 320


>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1193

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 212 LKELEARGRPTGWKQCGSLLLARTRD 289
           L++L+A  + TGW   GS ++  T+D
Sbjct: 322 LEQLDAMAKETGWFGYGSRIIITTQD 347


>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
           class), putative similar to zinc finger protein
           (GI:15811367) [Arabidopsis thaliana]; similar to
           TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana];
           similar to disease resistance protein RPP1-WsB
           (GI:3860165) [Arabidopsis thaliana]
          Length = 1996

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 152 VGAFKPTLA--QVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRD 289
           +GA +  L   +V +    +  LK+LEA    T W   GS ++  T D
Sbjct: 239 LGAIQERLCDQKVLIVLDDVNDLKQLEALANETSWFGPGSRIIVTTED 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,551,549
Number of Sequences: 28952
Number of extensions: 133674
Number of successful extensions: 325
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)