Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0169
         (588 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.4  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   5.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.8  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   7.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 469  HQNIIRNIKVFTTTCNIVKFMNKIMCGML 383
            H   I N+K +T    +V+  NK+  G L
Sbjct: 1059 HHLKISNLKTYTQYSVVVQAFNKVGAGPL 1087


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 255 PFLWSKVYDEDQ 220
           PFL   +YDED+
Sbjct: 55  PFLTETIYDEDE 66


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 460 IIRNIKVFTTTCNIVKFMNKIMCGMLILVFN 368
           I+ ++  F    N   F   I CG++ILV N
Sbjct: 508 ILTSVCYFMIGLNSQGFRFYIACGIMILVAN 538


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 422 VTSSRKYLNIAYDVLMRTFKWTRPRKCSRLIL 517
           V  SRK   ++ DV     +W +  K +  IL
Sbjct: 167 VVDSRKNTTVSIDVFPAVARWMQDPKTNHGIL 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,676
Number of Sequences: 336
Number of extensions: 2924
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)