Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0169
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    29   0.67 
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.67 
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   3.5  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   4.7  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   6.2  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   6.2  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   6.2  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    25   8.2  

>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 381 FLCSTIVSVVYVLCRGYIKCR*FVLEYFI 295
           FLC T V+ +Y+L R YI C     EYFI
Sbjct: 83  FLCLTFVAFLYLLDRLYINC----YEYFI 107


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 505 RTFSRSSPFKCTHQNIIRNIKVFTTTCNIVKFMNKIMCGMLILVFNY 365
           R FSR++P KC++Q           T   V F+  IM  +LI V NY
Sbjct: 114 RCFSRANPIKCSNQ---------VNTQYSVSFLFTIMASVLISVLNY 151


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 281 PVHASIKYSNTNYLHLIYPLHNT*TTETIVEHKN*HPTHDLVHKLDNVTSSRKYLNIAYD 460
           P +  I   N NY++   P     T E+++ H       DL+HK+     S++    A +
Sbjct: 245 PSYHEISVMNPNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPSKRI--SAIE 302

Query: 461 VLMRTF 478
           VL   F
Sbjct: 303 VLTHPF 308


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 219 FDLHHRPLTKEMVCKCFAQLFRF 287
           F LHHR    E  C C   +F F
Sbjct: 565 FRLHHRVEAVEAFCACLESMFSF 587


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 251 NGV*MLCSIIPVHASIKYSNTNYLHLI 331
           N V +LC II  H + KY +T++  +I
Sbjct: 764 NKVNLLCKIIREHLTSKYGDTHFQAII 790


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 147 VPNFSERLLPVSKFESWHSHIRFD 218
           VPN S +++ V  FE  HS+ + D
Sbjct: 685 VPNLSTKIISVELFEGSHSNEKID 708


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 452 AYDVLMRTFKWTRPRKCSRLILQKGIFNVLI 544
           +Y+V++ T++     K  RL L+   FNV +
Sbjct: 486 SYNVMLTTYRLAATSKADRLFLRNQKFNVCV 516


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 285 TGIIEQSI--YTPFLWSKVYDEDQNQIGCGYARIQISRQAIVSLK 157
           TG +E +   +T  LWS +    QNQ G     I   ++ I  LK
Sbjct: 102 TGFLESNATAFTEELWSLIISASQNQYGIPEKFILEKKEEISKLK 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,644
Number of Sequences: 5004
Number of extensions: 47702
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)