Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0169
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    29   2.7  
01_01_0088 + 688792-691441,691629-693013                               29   2.7  
07_01_0418 - 3186093-3186437,3187286-3187438,3187541-3188398,318...    28   4.8  
02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741...    28   4.8  
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364...    27   8.4  

>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
            708462-708702,708783-708857,708932-709017,709451-709523,
            709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 380  N*HPTHDLVHKLDNVTSSRKYLNIAY 457
            N +  HDL+H+L  + SSR+  NI Y
Sbjct: 1007 NHYVMHDLLHELSQIVSSRECANINY 1032


>01_01_0088 + 688792-691441,691629-693013
          Length = 1344

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 380 N*HPTHDLVHKLDNVTSSRKYLNIAY 457
           N +  HDL+H+L  + SSR+  NI Y
Sbjct: 563 NHYVMHDLLHELSQIVSSRECANINY 588


>07_01_0418 -
           3186093-3186437,3187286-3187438,3187541-3188398,
           3188479-3188541
          Length = 472

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 505 RTFSRSSPFKCTHQNII-RNIKVFTTTCNIVKFMNKIMCGML 383
           + F      K  H NI   N+++  + CN ++F+  + CG L
Sbjct: 175 KAFLNLKRLKLEHTNITDENMQILISNCNALEFLGIVDCGKL 216


>02_02_0440 -
           10273032-10273259,10273423-10273461,10273875-10274123,
           10274203-10274329,10275009-10275251,10275359-10275457,
           10275566-10275681,10275813-10276039,10276164-10276276,
           10276402-10276522,10276641-10276855,10277042-10277225,
           10277739-10278048,10278155-10278249,10278473-10278485
          Length = 792

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 252 FLWSKVYDEDQNQIGC-GYARIQISRQAIVSLKSLV 148
           F+WS +Y+E+ N +G  GYA+  I  + +  L  L+
Sbjct: 565 FMWSSLYEENGNVLGLEGYAKDGILARTLCQLIDLL 600


>04_03_0548 -
           17035394-17035749,17035761-17036295,17036325-17036458,
           17037053-17037134
          Length = 368

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 410 KLDNVTSSRKYL-NIAYDVLMRTFKWTRPRK 499
           +L    SS +YL  IA DVL++ + WT+ RK
Sbjct: 333 RLQLANSSVRYLAGIAEDVLVKIWTWTQSRK 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,535,976
Number of Sequences: 37544
Number of extensions: 274024
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)