Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0169
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          24   1.3  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   1.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.0  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 422 VTSSRKYLNIAYDVLMRTFKWTRPRKCSRLILQKGI 529
           +T   K+  + Y+ + R   W+RPR+ ++   + GI
Sbjct: 29  ITGDEKW--VVYNNIKRKRSWSRPRESAQTTSKAGI 62


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 425 TSSRKYLNIAYDVLMRTFKWTRPRKCSR 508
           TSS    N  +D    + +++R R+CSR
Sbjct: 212 TSSNSLRNRTHDFQHTSSRYSRERRCSR 239


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 422 VTSSRKYLNIAYDVLMRTFKWTRPRKCSRLILQKGI 529
           +T   K+  + Y+ + R   W+RPR+ ++   + GI
Sbjct: 150 ITGDEKW--VVYNNIKRKRSWSRPREPAQTTSKAGI 183


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 84  VGEPSSVSQN-LPPDRNHYVPITYQQTMK 1
           +G P+      +P +R  Y PIT+Q   +
Sbjct: 657 IGSPTPAESTFIPEERRIYSPITFQDVAR 685


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 387 C*FLCSTIVSVVYVLC 340
           C F  +TIVS   +LC
Sbjct: 434 CVFFLTTIVSTTVILC 449


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 28  YVVISIWW*ILRNTA 72
           Y V+S+W+ I RN+A
Sbjct: 276 YYVMSLWYWIDRNSA 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,610
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)