Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0164
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    30   0.17 
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   6.3  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 459 GRVHSPPDVKWLLEPIDIYN---VNAATHFENEF-*GLSIVTMAAPPFKPKRITALR 301
           G +H P  V WLL P DIY+   VN     ++E   G+S+V        P  +T LR
Sbjct: 236 GPLHDPNTVMWLLRP-DIYSGRKVNVQIETQSELTMGMSVVDWWQVGLLPANVTFLR 291


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 375 SQNGWRHLRCICLW 416
           S  GW HL+C+C++
Sbjct: 295 SFQGWIHLKCLCVY 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,881
Number of Sequences: 5004
Number of extensions: 29638
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)