Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0163
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   4.4  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.9  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   7.8  

>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 629 FSTAGEILARWLGIRIEASST*TSPSYSLDFFHAVL 522
           F    E   +WL  R+EASS   +   S+DF  A L
Sbjct: 294 FDAFVEFEEQWLSARVEASSGNANDELSIDFHMAWL 329


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 198 HSLIAAKSCALVLTSSFNSSRIFFHSSPEG*IRVAVDAISLLQYVTIQFGTSCF 37
           H  I A S  L+L   +  +R FF SS    IR++ + I LL   ++    +C+
Sbjct: 117 HLEITAMSEQLIL-QKYQKNRFFFMSSINALIRISRNCIKLLFKNSLVLLAACY 169


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 358 NQTRANGPAE*SPRTYTPWLDASRSTSNHRQSTGQE 465
           NQT+ + P + S  T     D S++  NH QS  +E
Sbjct: 295 NQTQLSSPNKSSSPTSIEISDFSKNNENHDQSENKE 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,140
Number of Sequences: 5004
Number of extensions: 64008
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)