Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0163
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 31 1.1
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 29 2.6
04_01_0369 + 4840371-4841294,4841921-4842559 29 3.5
06_01_0884 - 6777988-6777997,6778403-6778530,6778537-6778606,678... 29 4.6
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144... 29 4.6
06_01_1079 + 8832779-8833960 28 6.0
11_05_0019 + 18426960-18427292,18428039-18428163,18428722-184288... 28 8.0
11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120... 28 8.0
06_02_0244 - 13445023-13445400,13445495-13446823 28 8.0
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -2
Query: 516 PIIIASLKTSLSWFVSRFLSSALA-MVTRRP*GVKPGSVG-PWALFSRSISSGLVTSLFA 343
P + + TSLSW F SS LA + G+ G++G W+ S + S L + FA
Sbjct: 258 PGYLFQMLTSLSWICWVFPSSVLAQQLGSGLRGLGVGAIGLDWSSISSYLGSPLASPWFA 317
Query: 342 K-NSGQAALIVKYI 304
N G IV YI
Sbjct: 318 TVNVGVGFFIVMYI 331
>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
Length = 751
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 236 LPTHLVDGVAFSA-TP*LQLSPVPWC*HPHSIPRGFSSTVPRKAESGSP 93
LP H+ + VA ++S V WC + + GFS V A +G P
Sbjct: 568 LPLHVANEVASPLQAAAAKVSDVHWCRRSNEVKHGFSQLVAGSATAGGP 616
>04_01_0369 + 4840371-4841294,4841921-4842559
Length = 520
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +2
Query: 98 TLIQPSGELWKKIREELNEDVNTRAQDLAAIKEWLRKQPHL 220
T++ P+G+ W+K+R+ L ++ + A + + + + HL
Sbjct: 116 TIMSPAGDQWRKMRQVLTSEILSPAMERRMLGRRVEEADHL 156
>06_01_0884 -
6777988-6777997,6778403-6778530,6778537-6778606,
6780057-6780173,6780889-6781044,6781843-6781880,
6792858-6792902,6793606-6793671,6794348-6794527,
6794575-6794697
Length = 310
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 570 YVNVS-QLFPRLLSRSLTSPIIIASLKTSLSWFVSRFLSSALAMVTRRP*GV 418
Y ++S L +LLS+ L + ++ A L + WF SR + M RR GV
Sbjct: 172 YASLSLYLLFKLLSKDLVNAVLTAILGIAALWFFSRRFAKETNMEGRREGGV 223
>02_03_0205 -
16411707-16412759,16413077-16413256,16413960-16414498,
16414798-16414825
Length = 599
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 176 DLAAIKEWLRKQPHLPDEWEDACLMT 253
D+ +I+EW QPHLP+E ++T
Sbjct: 129 DVLSIEEWSLIQPHLPNETNTKIIVT 154
>06_01_1079 + 8832779-8833960
Length = 393
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Frame = +2
Query: 29 RITKQLVPNWIVTYCKSEMASTATLIQPSGELWKKIREELNEDVNTRA--QDLAAIKEWL 202
R T L P+W ++ K E ++ I P E W I + + + A +L ++ W
Sbjct: 201 RFTCSLPPSWAKSHAKMEEFNSTPYISPYSERWAAIGTDADAEKRAVAVVHELLSLTLWK 260
Query: 203 R----KQPHLPDEW---EDACLMTFLRGCSF 274
+ K H E+ ED M C F
Sbjct: 261 KMSVLKLEHFRREFGLPEDTARMLHRHPCLF 291
>11_05_0019 +
18426960-18427292,18428039-18428163,18428722-18428874,
18428959-18429145
Length = 265
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -2
Query: 402 GPWALFSRSISSGLVTSLFAKNSGQAALIVKYISSFFLHFSREK--LQPRRKVIRHASS- 232
G W+L RS+ S +V F K GQ + F+R + R +VI +
Sbjct: 99 GLWSLIKRSVKSKVVQKTFVKEEGQTMAPNQVAGEILSFFTRNNFTISDRGEVITFEGTM 158
Query: 231 -HSSGRWGCFLSHSLIAAKSCALVLT 157
S G+ + I+ S LVL+
Sbjct: 159 VPSRGQAALLTFCTCISLGSVGLVLS 184
>11_01_0145 +
1204021-1204296,1204430-1204492,1204667-1204795,
1205778-1205834,1205915-1206213,1206539-1206630,
1206747-1206961,1207142-1207325,1207447-1207541,
1208572-1208628,1209372-1209426,1209955-1210079
Length = 548
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 44 LVPNWIVTYCKSEMASTATLIQPSGELWKKIREELNEDVNTRAQ 175
+VPNW++ ++ +TA LI E +I E + + V+T+++
Sbjct: 142 VVPNWLMKKTPLKLGATAGLILIGDEKANQILEAVRDVVHTKSK 185
>06_02_0244 - 13445023-13445400,13445495-13446823
Length = 568
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 299 LDMYFTMRAACPEFFANRDVTRPELMDLLNRAQGPTLPGLTPQGRRVTIARALDKNLD 472
L Y R C E NRD E+ D++ A+G LPG + T++ +D++LD
Sbjct: 511 LTPYDIGRILCRET-VNRD---SEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLD 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,939,807
Number of Sequences: 37544
Number of extensions: 438211
Number of successful extensions: 1274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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