Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0163
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_786| Best HMM Match : EGF (HMM E-Value=0)                           29   3.5  
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               29   4.7  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)               28   6.2  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +2

Query: 68  YCKSEMAS---TATLIQPSGEL---WKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDE 229
           Y +SE  +   +  L+ P  EL   WK  R  L  D  T    L +++  L+K P L  E
Sbjct: 737 YSRSEQRALNKSCRLVDPGYELALLWKPDRPPLPNDYATALSRLESVERRLQKDPELAQE 796

Query: 230 WEDA 241
           ++ A
Sbjct: 797 YKKA 800


>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +2

Query: 284  KCKKKLDMYFTMRAACPEFFANRDVTRPELMDL-LNRAQGPTLPGLTPQGRRVTIARALD 460
            +C+   ++  T R   P   A     RP++  L   R   PT P  TP  RR+ I     
Sbjct: 1347 RCRGHYEIPVTTRPLTPRRPAGYYFPRPQVTQLPRTRGTRPTTPVFTPSSRRIKIHPQTK 1406

Query: 461  KNL-DTNQLNDVFKL 502
            + L D  +L +   L
Sbjct: 1407 QELEDEKELAEALAL 1421


>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 136 PRGIE*GC---QHQGTGLSCNQGVAEKATPSTR*VGRRV 243
           PR +E  C    HQ + ++C QG   K+T S   +GR+V
Sbjct: 186 PRPLELTCTQGSHQKSKVTCTQGSYNKSTDSNEALGRKV 224


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 586  LMPSHLAKISPAVLXKFFICIQEAYPVKLEGNTR 687
            ++P  L+ +SPA L   F C+ E++ V  E N R
Sbjct: 2204 VLPGLLSYLSPANLSVLFDCLMESHTVAYEFNAR 2237


>SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)
          Length = 344

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +2

Query: 80  EMASTATLIQPSGELWKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFL 259
           ++  T+    P+G ++K +RE     +     D  A    +R  P  PDEW D+    F 
Sbjct: 105 KLRPTSQWSDPAG-VFKILREVFGVGLTIHPSDREADGARVRPCPDAPDEWRDSAERIFQ 163

Query: 260 RGCSFS 277
               FS
Sbjct: 164 TKTPFS 169


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 50   PNWIVTYCKSEMASTATLIQPSGELWKKIREELNEDVNT 166
            P+  VTY KS   +T+ L+QPS      +  EL++ VNT
Sbjct: 995  PSINVTYVKSPSLTTSGLLQPSPS--ANVTTELSKPVNT 1031


>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 155 PHSIPRGFSSTVPRKAESGSPLMPSHFC 72
           P ++P+  ++T+PR + SG P +P+  C
Sbjct: 338 PPTLPKRGTATLPRTSSSGRPSIPTSRC 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,585,210
Number of Sequences: 59808
Number of extensions: 477174
Number of successful extensions: 1562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)