Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0163
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    32   0.33 
Z66512-1|CAA91322.1|  638|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81551-1|CAB04483.2|  335|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    27   9.5  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 562 RLPAIPSTSFTQSYISDHHCKFEDIIKLVRVQVLVQCSGDGYS 434
           R PAI + S T +++      + D++K VR+Q  + C G G S
Sbjct: 152 RTPAIYAISLTNTFLEFSEFLYNDLVKFVRLQDGLGCCGTGKS 194


>Z66512-1|CAA91322.1|  638|Caenorhabditis elegans Hypothetical
           protein F52H3.2 protein.
          Length = 638

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 383 LNRAQGPTLPGLTPQGRRVTIARALDKNLDTNQLNDVFKLAMMIGDV 523
           LNRAQGP + GL     R  I R L K    N++N   +L ++ G+V
Sbjct: 94  LNRAQGPAVLGL-----RAQIDRKLYKTQMQNEINSTKRLEILEGEV 135


>Z81551-1|CAB04483.2|  335|Caenorhabditis elegans Hypothetical
           protein F56A12.1 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = -3

Query: 272 SYSLGEKSSGTRLPTHLVDGVAFSATP*LQLSPVPWC*HPHSIPRGFSSTVPRKAESGSP 93
           S S    S+ +  P+H+ D  + S  P  +LS       P S+    S +V   A   SP
Sbjct: 29  SSSNSNTSNSSTSPSHISDQFSSSGGPPYELSSHILT--PSSVIPTPSPSVA-SASISSP 85

Query: 92  LMPSHFCNMSQSSLEQV 42
            +P+  C MS+ S+EQ+
Sbjct: 86  TIPAFGCTMSEYSMEQM 102


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
           protein T04H1.4b protein.
          Length = 1312

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +2

Query: 128 KKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFLRGCSFSLEKCKKKLD 304
           KKI EE   DV    Q L  ++   RKQ       E          CS   E+  +KL+
Sbjct: 586 KKIMEEDLRDVQLNVQKLETMQHQYRKQEESLTAQELKLSENIFEACSCEAEEVSEKLE 644


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
           protein T04H1.4a protein.
          Length = 1298

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +2

Query: 128 KKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFLRGCSFSLEKCKKKLD 304
           KKI EE   DV    Q L  ++   RKQ       E          CS   E+  +KL+
Sbjct: 572 KKIMEEDLRDVQLNVQKLETMQHQYRKQEESLTAQELKLSENIFEACSCEAEEVSEKLE 630


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
           ceRAD50 protein.
          Length = 1298

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +2

Query: 128 KKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFLRGCSFSLEKCKKKLD 304
           KKI EE   DV    Q L  ++   RKQ       E          CS   E+  +KL+
Sbjct: 572 KKIMEEDLRDVQLNVQKLETMQHQYRKQEESLTAQELKLSENIFEACSCEAEEVSEKLE 630


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 176 PVPWC*HPHSIPRGFSSTVPRKAESGSPLMP 84
           P P+  HP   P G+  + P K   GSP  P
Sbjct: 436 PNPYGMHPGMTPGGYPMSAPGKMPFGSPSFP 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,040
Number of Sequences: 27780
Number of extensions: 355669
Number of successful extensions: 1083
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)