Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0163
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.68 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.68 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.68 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.3  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = +2

Query: 125 WKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFLR--GCSFSLEKCKKK 298
           WK    +   D   +   L+   ++    P   D+W D   +T LR  G   SL    KK
Sbjct: 37  WKFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVISKK 96

Query: 299 L 301
           +
Sbjct: 97  V 97


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = +2

Query: 125 WKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFLR--GCSFSLEKCKKK 298
           WK    +   D   +   L+   ++    P   D+W D   +T LR  G   SL    KK
Sbjct: 37  WKFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVISKK 96

Query: 299 L 301
           +
Sbjct: 97  V 97


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = +2

Query: 125 WKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFLR--GCSFSLEKCKKK 298
           WK    +   D   +   L+   ++    P   D+W D   +T LR  G   SL    KK
Sbjct: 37  WKFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVISKK 96

Query: 299 L 301
           +
Sbjct: 97  V 97


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 131 SSTVPRKAESGSPLMPSHFCNMSQSS 54
           SS +P  AES +   P H+   S S+
Sbjct: 28  SSGIPHSAESSASNSPDHYERFSPST 53


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +2

Query: 125 WKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFLR--GCSFSLEKCKKK 298
           WK I  +   D   +A   +   ++ +  P   D+W +   +  +R  G   SL    +K
Sbjct: 41  WKYIDYDFGSDEKRQAAIQSGEYDYTKNYPFDVDQWHNKTFLAVIRYDGVPSSLNVISEK 100

Query: 299 L 301
           +
Sbjct: 101 I 101


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/46 (21%), Positives = 18/46 (39%)
 Frame = +2

Query: 125 WKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFLR 262
           WK    +   +   +A   +   +  +  P   D+W D   +T LR
Sbjct: 38  WKYFDYDFGSEERRQAAIQSGEYDHTKNYPFDVDQWRDKTFVTILR 83


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +1

Query: 616 PAVLXK-FFICIQEAYP 663
           PAV  + F+IC +E YP
Sbjct: 208 PAVRNEAFYICCEEPYP 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,083
Number of Sequences: 438
Number of extensions: 4433
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)