Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0163
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    31   0.72 
At1g61680.1 68414.m06957 terpene synthase/cyclase family protein...    31   0.72 
At2g19870.1 68415.m02323 tRNA/rRNA methyltransferase (SpoU) fami...    30   1.3  
At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA...    28   5.0  
At1g30835.1 68414.m03770 expressed protein                             28   5.0  
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE...    28   6.7  
At4g21630.1 68417.m03135 subtilase family protein contains simil...    27   8.8  
At2g35620.1 68415.m04368 leucine-rich repeat transmembrane prote...    27   8.8  

>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 65  TYCKSEMASTATLIQPSGELWKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDAC 244
           T+ K++ A+   L + + +L +++ E++ E V  + ++LA   E  +K   L  + E A 
Sbjct: 159 THLKNQQATIRRLEERNRQLEQQMEEKIKEVVEIKQRNLA---EENQKTMELLKDREQA- 214

Query: 245 LMTFLRGCSFSLEKCKKKLDM----YFTMRAACPEFFANRDVTRPELMDLLNRAQGPTLP 412
           L   LR    S+   +K  ++     F +RA   E  A +      LMD + RAQ   L 
Sbjct: 215 LQDQLRQAKDSVSTMQKLHELAQNQLFELRAQSDEETAGKQSEVSLLMDEVERAQTRLLT 274

Query: 413 GLTPQGRRVTIARALDKNLDTNQLNDVFKLAMMIGDVRLRER 538
               +G   +  +  +++ D  + +++   +M+   +  +E+
Sbjct: 275 LEREKGHLRSQLQTANEDTDNKKSDNIDSNSMLENSLTAKEK 316


>At1g61680.1 68414.m06957 terpene synthase/cyclase family protein
           similar to 1,8-cineole synthase [GI:3309117][Salvia
           officinalis]; contains Pfam profile: PF01397 terpene
           synthase family
          Length = 569

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +2

Query: 362 RPELMDLLNRAQGPTLPGLTPQGRRVTIARALDKNLDTNQLNDVFKLAMMIGDVRLRERS 541
           + E+M  L + +  T+ GLT   +R T    +    D   L  + ++A  I  +RL+  +
Sbjct: 214 KQEIMKSLAQPRHKTVRGLT--SKRFTSMIKIAGQEDPEWLQSLLRVAE-IDSIRLKSLT 270

Query: 542 RGNSWETFTYWTLL 583
           +G   +TF +WT L
Sbjct: 271 QGEMSQTFKWWTEL 284


>At2g19870.1 68415.m02323 tRNA/rRNA methyltransferase (SpoU) family
           protein similar to SP|P25270 Ribose methyltransferase
           PET56 (EC 2.1.1.-) {Saccharomyces cerevisiae}; contains
           Pfam profile PF00588: SpoU rRNA Methylase (RNA
           methyltransferase, TrmH) family
          Length = 589

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 107 QPSGELWKKIREELNE-DVNTRAQDLAAIKEWLRKQPHLPDEWEDA 241
           +P    W +I+   N  DV  + +D AA + W R++      W++A
Sbjct: 258 EPDNTRWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEA 303


>At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA) /
           sigma factor 1 (SIG1) identical to sigma factor SigA
           [Arabidopsis thaliana] GI:5478439, sigma factor 1
           [Arabidopsis thaliana] GI:2353171, plastid RNA
           polymerase sigma-subunit [Arabidopsis thaliana]
           GI:2398851; contains Pfam profiles PF04545: Sigma-70,
           region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
           region 2
          Length = 502

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -3

Query: 311 STYQVSFYISQGRSYSLGEKSSGTRLPTHL 222
           STY V ++I QG S +L + S   RLPTHL
Sbjct: 312 STY-VYWWIRQGVSRALVDNSRTLRLPTHL 340


>At1g30835.1 68414.m03770 expressed protein
          Length = 132

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 331 PRVLREQRRNQTRANGPAE*SPRTYTPWLDASRSTSNHRQSTGQEP 468
           PR L E + N +   GP +  PRT +P   A R TS    ++  EP
Sbjct: 29  PRDLSEPKTNLSGKGGPPQPRPRTSSP-QQARRETSKLTFNSTDEP 73


>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
           (incomplete root hair elongation) [Arabidopsis thaliana]
           gi|6729346|dbj|BAA89783; contains protein kinase domain
           Pfam:PF00069
          Length = 1296

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 125 WKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDAC--LMTFLRGCSFS 277
           ++K +EE+N D+   A DL  +   L K      EWE+    L+   R C+ +
Sbjct: 331 FEKAKEEVNSDLAVFAADLVGV---LEKNAESHPEWEETFEDLLILARSCAMT 380


>At4g21630.1 68417.m03135 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 772

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 32  ITKQLVPNWIVTYCKSEMASTATLIQPSGE 121
           + K L PNW     +S + +TA    PSGE
Sbjct: 567 LLKSLHPNWSPAAMRSALVTTAWRTSPSGE 596


>At2g35620.1 68415.m04368 leucine-rich repeat transmembrane protein
           kinase, putative similar to somatic embryogenesis
           receptor-like kinase 1 (SERK1) [Zea mays]
           gi|13897318|emb|CAC37640; contains leucine rich repeat
           (LRR) domains, Pfam:PF00560; contains protein kinase
           domain, Pfam:PF00069
          Length = 589

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 216 WGCFLSHSLIAAKSCALVLTSSFNSSRIFFH 124
           WGCFL   L   +S +LV+     +S + FH
Sbjct: 257 WGCFLYKKLGRVESKSLVIDVGGGASIVMFH 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,927,684
Number of Sequences: 28952
Number of extensions: 345103
Number of successful extensions: 1014
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)