Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0162
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 37   0.016
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.038
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.066
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   33   0.20 
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)                 31   0.61 
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       30   1.4  
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)                    30   1.4  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        30   1.9  
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)                 30   1.9  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              29   2.5  
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)                  29   2.5  
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)                    29   3.3  
SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                27   9.9  
SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)           27   9.9  
SB_12030| Best HMM Match : DUF413 (HMM E-Value=1.5)                    27   9.9  
SB_4728| Best HMM Match : DUF593 (HMM E-Value=2.2)                     27   9.9  

>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 408 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 548
           E P  EA+S D KVE P  + E  + EV+ATV E+    + +A   E
Sbjct: 22  ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPMEEAAASVE 68


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 420  AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP-SATDAEGSADSAAIIPNMVKKI 596
            A  + A++ +EE   Q ED++  V+   A + K E P   T+A    D A       K +
Sbjct: 1172 ASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDEAP-AEKTEKPV 1230

Query: 597  DLAPTVESDAAAIPE 641
            +  P+V+   A + E
Sbjct: 1231 EAGPSVQEAEAPVKE 1245



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 24/81 (29%), Positives = 44/81 (54%)
 Frame = +3

Query: 402 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 581
           ++E+P  +A ++  + E PAA+PE +  E +A V + + EE P A + E + D       
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEE-PEALN-EKAEDPKDEDET 644

Query: 582 MVKKIDLAPTVESDAAAIPEI 644
             +K ++ P  E++A A  E+
Sbjct: 645 QEEKAEV-PIDEAEAEAQAEV 664


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = +3

Query: 426  AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLA 605
            AKS D+K  E A++ ++  T+      ++ K+ KP++   +  A  +A + N  K +++ 
Sbjct: 1912 AKSKDVKNAEEASRNDEDDTKTGNVSEDLIKQAKPTSKTRKKRASLSAKVTNFEKTVNVD 1971

Query: 606  PTVESDAAAIPEI 644
               +S    +P +
Sbjct: 1972 VESQSSERELPRV 1984


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +3

Query: 447  VEEPAAQPEDSKTEVQATV--AEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPT 611
            +E PA   ED KT+ +AT   AE+ +E KP+A D + SA S     ++   I+++PT
Sbjct: 1129 LESPA---EDVKTDFEATSLEAEVFEEYKPTAKDVKESASSTV---HLAADIEISPT 1179


>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
          Length = 410

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +3

Query: 417 DAEAKSADIKVEEPAAQPEDSKT----EVQATVAEISKEEKPSATDAEGSADSAAIIP 578
           DAE  S+ I V  P+AQ E  +T     V + +A ++ E      D+    D  AIIP
Sbjct: 285 DAEPASSSISVSVPSAQAEQGRTTEGRPVSSDIATVAMEVPEVQGDSLADVDIDAIIP 342


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 399 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 578
           K++ +P+A   +A  +  E  AQPE  K        E + + + + T A+  A  A   P
Sbjct: 393 KATALPEAPKATAQPEAPEATAQPEAPKATALPEAPEATAQPEATETTAQPKAQKATAQP 452


>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
          Length = 636

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 399 KSSEIPDAEAKSADIKVEEPAA-QPEDSKT-EV---QATVAEISKEEKPSATDAEGSADS 563
           K +   D  + S+D  +E   A +P  S T EV     T A +  EE+PS TD EGS  +
Sbjct: 359 KQTTAHDPTSSSSDQLIEHSVAGRPSPSVTPEVAREDCTQASLQLEERPSNTDGEGSGQT 418


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 414  PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAA 569
            PD +A + + + + P +Q EDS +    T   +S EE+P    ++ S  SAA
Sbjct: 915  PDPQAPATNNQTDNPPSQYEDSSS--SETNGVLSDEEQPPLPLSDSSIQSAA 964


>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
          Length = 191

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 405 SEIPDAE-AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 557
           S++P  + AK+A+ + E+ A  PE+   E     A    E K ++ D EG+A
Sbjct: 50  SKMPSKKGAKAAEAQPEKKAEAPEEKPAEDSKDQAVEESETKDASKDGEGNA 101


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +3

Query: 399  KSSEIPDAEAKSADIKVEEPAA-QPEDSK-TEVQATVAEISKEEKPSA-TDAEGSADSAA 569
            K  +  D E K  + + E+    + E +K TEVQ  V E +KEE PS   DAE     A 
Sbjct: 1025 KKRKDSDKERKVKEKEEEQKVKIEKEPNKVTEVQLMVEETNKEESPSTDRDAESELPKAG 1084

Query: 570  IIPNMVKKIDLAPT 611
             +  ++      P+
Sbjct: 1085 SVSALLSVFATEPS 1098


>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
          Length = 595

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 529 GFSSFEISATVACTSVFESSG*AAGSSTLISADFASASGISDDF 398
           G SS ++    +C+SVFE +  A  SS L  AD + +  IS ++
Sbjct: 498 GGSSSQMDVMGSCSSVFEQAMLAGESSNLSDADKSESKDISKNY 541


>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
          Length = 932

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = +3

Query: 429 KSADIKVEEPAAQPED--SKTEVQATVAEISKEEKPSATDAEGS--ADSAAIIPNMVKKI 596
           +S D +   PA          E QAT    S    P +TDA+ S  A S A IP+     
Sbjct: 626 RSTDAQASRPATSNATVPRSAETQATRPTTSNATIPRSTDAQASRQATSTATIPSAADAQ 685

Query: 597 DLAPTVESDAAAI 635
              PT  + A  I
Sbjct: 686 ASKPTTPTSATPI 698


>SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/76 (31%), Positives = 31/76 (40%)
 Frame = +3

Query: 399 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 578
           + S + +AEA       EE  A+PE   T       E S E KP A+  E +A   A  P
Sbjct: 492 RKSPVSEAEAPKPSAAKEE--AEPEQMDTSEPEPAKEPSSEIKPEASKPE-TAKPEATSP 548

Query: 579 NMVKKIDLAPTVESDA 626
              +     P  ES A
Sbjct: 549 TDGEPAKPEPAEESSA 564


>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1918

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +3

Query: 432 SADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII--PNMVKKI 596
           SA  +    A++  D ++++  + A+  K+E+ SAT  +  ++S+ ++  P+ ++KI
Sbjct: 196 SATHRTLSAASRDLDKRSDISLSSAKPEKQEQESATVEQPESESSTMVLYPHQIQKI 252


>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 441  IKVEEPAAQPEDSKTEVQATVAEISKEEKPS---ATDAEGSADSAAIIPNMVKKIDLAPT 611
            I +  P    E S+  +   ++E+ K+E  +    T+ +  A SAA +PN+V   D +P+
Sbjct: 1421 ISLPPPYLTDECSQDMIDDWLSELDKQENATFEPPTNFDDFAKSAAGLPNVVSTSDKSPS 1480

Query: 612  VE 617
             +
Sbjct: 1481 CD 1482


>SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)
          Length = 362

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 408 EIPDAEAKSADIKVEEPAAQPEDS-KTEVQATVAEISKEEKPSATDAEG 551
           E+ DA     D +VEEPA+  ++S KT++   + +    +K     A G
Sbjct: 73  EVDDAALDDEDEQVEEPASDTDESGKTDLNDPMIDDQDADKEIELQARG 121


>SB_12030| Best HMM Match : DUF413 (HMM E-Value=1.5)
          Length = 377

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 444 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVE 617
           +VE    Q E+   +      E  ++   +A D  G+  S A+     K +DL  TVE
Sbjct: 273 EVEYQRKQAENMANDANKLRDERERKRDAAAPDGGGAVSSFAVFTLKAKVVDLEKTVE 330


>SB_4728| Best HMM Match : DUF593 (HMM E-Value=2.2)
          Length = 235

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 444 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVE 617
           +VE    Q E+   +      E  ++   +A D  G+  S A+     K +DL  TVE
Sbjct: 153 EVEYQRKQAENMANDANKLRDERERKRDAAAPDGGGAVSSFAVFTLKAKVVDLEKTVE 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,699,181
Number of Sequences: 59808
Number of extensions: 237621
Number of successful extensions: 1141
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)