Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0162
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    33   0.13 
U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical pr...    32   0.40 
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    30   1.2  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   2.1  
Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   5.0  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   5.0  
U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = +3

Query: 399 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 563
           KS E P  E K ++  V     +EPAA  E+ K   +  V E  KEE P++  +E   D 
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPAS--SEEKKDE 183

Query: 564 AAIIPNMVKKIDLAPTVESDAAAIPE 641
             +     K    AP  + ++ A  E
Sbjct: 184 PVVNTEEKKDAAEAPAADEESEAAEE 209


>U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical
           protein T20F5.5 protein.
          Length = 226

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 429 KSADIKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLA 605
           KSA  K+  P+ + ED++ T+  A+  E S + KP  T  E SAD    + ++  +  LA
Sbjct: 66  KSASKKLRVPSKESEDTQPTKSDASQTEKSTK-KPPVTLVESSADVTTAVESISSQQQLA 124

Query: 606 P 608
           P
Sbjct: 125 P 125


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 444 KVEEPAAQP-EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTV 614
           K+EE A +  E+ K ++Q+  A           D   S D   +IP  VK I   PT+
Sbjct: 435 KLEEHAVKKLEEEKDKLQSAAAPEDDSPASPPMDCPASPDMVPVIPQTVKIIPTVPTI 492


>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
           protein F52H3.7a protein.
          Length = 1245

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 420 AEAKSADIKVEEPAAQPEDSKTEVQ----ATVAEISKEEKPSATDAEGSADSAAIIPNMV 587
           A A+SA   VEE AA  E ++  V+    AT A  S  E+P A     +A+S    P   
Sbjct: 610 APAESAPASVEE-AAPSESTQAPVEEHKDATTAADSSHEEPKAESDAPAAESVETAPVEE 668

Query: 588 KKIDLAPT 611
            K + +PT
Sbjct: 669 HKDEASPT 676


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 29/121 (23%), Positives = 42/121 (34%)
 Frame = +3

Query: 276 SNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEE 455
           +++  PA  EA   D A  ++  A                A SS +P+     A    E 
Sbjct: 504 ASEPAPAPIEAPATDAATLETAPAPAAEPAPAAEAAAGYDAPSS-VPEETPAPAPAADET 562

Query: 456 PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAI 635
           PA  P   +T   A  AE +    P+A +   +A +A   P      D  P     A   
Sbjct: 563 PAPAPAAEETPAPAPAAEETPAPAPAAEETPATAPAAEETPAPAPAADETPAPAPAAEET 622

Query: 636 P 638
           P
Sbjct: 623 P 623



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +3

Query: 396 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATD-----AEGSAD 560
           A+++E   A A +A+   E PA+ P   +T   A  AE +    P+A +     AEG+A 
Sbjct: 684 AQAAEETPAPAPAAE---ETPASAPAAEETPAPAPAAEEAPAPAPAAPETPAPAAEGAAA 740

Query: 561 SAAIIPNMVKKIDLAPTVESDAA 629
            A I+ +         TV + +A
Sbjct: 741 PAPIVSSGYDAAQSTDTVVASSA 763


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 447 VEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 593
           VEEP   P   KT +    A  +    PSA  + GS+   +   N +KK
Sbjct: 235 VEEPIPPPNTRKTLLGEPPAGAASSSSPSAQSSTGSSTGTSSYQNNIKK 283


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 396 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 557
           A+  E  +A A+ A  + EEP A  E++  E +       +EEKP A   E  A
Sbjct: 21  AEEVEEEEAAAEDAAAEEEEPEAAEEEAPVEEKPKPRPPVQEEKPPAEMTEAEA 74


>Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 465 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 608
           + E+ + E+Q   A+ S+ E PS++    S+DS +      KK  +AP
Sbjct: 24  EEEEEEEEIQPGPADSSESENPSSSSDSSSSDSDSDSDAAPKKNIIAP 71


>Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 465 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 608
           + E+ + E+Q   A+ S+ E PS++    S+DS +      KK  +AP
Sbjct: 24  EEEEEEEEIQPGPADSSESENPSSSSDSSSSDSDSDSDAAPKKNIIAP 71


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +3

Query: 399  KSSEIPDAEAKSADIKV--------EEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS 554
            K SEIPD +     +KV        E+P + PE+S+ E       ++K++K      + S
Sbjct: 2869 KGSEIPDEDENGESVKVMKRKEYQIEKPQSMPEESEDE---EFKLLTKKKKMGVIANDPS 2925

Query: 555  ADSAAIIPNMVKK 593
             D + II    KK
Sbjct: 2926 NDGSEIIKMSKKK 2938


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 129 VSLAMPVAEEKDVVPAQPIL 188
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 129 VSLAMPVAEEKDVVPAQPIL 188
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 129 VSLAMPVAEEKDVVPAQPIL 188
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 129 VSLAMPVAEEKDVVPAQPIL 188
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical
           protein C53C9.2 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 408 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 548
           E  + E +  + K+EEPAA+ E+ + E +    E   EE+    + E
Sbjct: 347 EPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEELEEEEEEEEEE 393


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 415 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 516
           P L  N+LI  WK +    K ++ KY +  LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 411 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVA-EISKEEKPSATDAEGSADSAAIIPNMV 587
           +PD E    D +VEEP A+    K  V A  A E  + E     +A+ S++   + P+  
Sbjct: 1   MPDPEDPGRDEEVEEPLAK----KIRVVAQEAGEDEESEMEKEPNADLSSEEELVAPDAE 56

Query: 588 KKIDLAPTVESDAAA 632
              D  P ++++A A
Sbjct: 57  ---DFVPEIDNEATA 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,136
Number of Sequences: 27780
Number of extensions: 175956
Number of successful extensions: 750
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)