Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0161
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716...    31   0.93 
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210...    30   2.2  
04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174     29   3.8  
01_06_1749 - 39636951-39638102                                         29   5.0  

>04_03_0988 -
           21469811-21469831,21470823-21471047,21471327-21471634,
           21471864-21472234,21472327-21472430,21473086-21473325
          Length = 422

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +1

Query: 304 PVVKWLLEPIDIYNVNAPPTLRYKL*GLKYSYNGCPTLQTETH 432
           PV+  L EPI +  VNA    +Y+  G KY  +G PTL    H
Sbjct: 86  PVLAGLSEPIIVAKVNAD---KYRKLGSKYGVDGFPTLMLFIH 125


>02_04_0182 +
           20719782-20720033,20720502-20720605,20720693-20721066,
           20721302-20721609,20721853-20722092
          Length = 425

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 304 PVVKWLLEPIDIYNVNAPPTLRYKL*GLKYSYNGCPTLQTETH 432
           PV+  L  PI +  VNA    +YK  G KY  +G PTL    H
Sbjct: 90  PVLAGLSTPIVVAKVNAD---KYKKLGSKYGVDGFPTLMLFDH 129


>04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174
          Length = 202

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 252 NYNFLFYCLDWWTSSQPTC--CKV 317
           ++NF  YCLD W   Q TC  C++
Sbjct: 116 HHNFHLYCLDAWLLKQTTCPICRI 139


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 386 SSIVTTAAPPFKPKRITA 439
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,095,280
Number of Sequences: 37544
Number of extensions: 414258
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)