Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0160
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 110 9e-25
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05) 39 0.003
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09) 37 0.014
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2) 33 0.17
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 29 3.6
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5) 28 8.3
SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0) 28 8.3
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 110 bits (265), Expect = 9e-25
Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Frame = +2
Query: 62 VETISPGDESTYPKS-GQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEG 238
+E +S ++ T G T+ +HYTG L NG KFDSS DRGK F F +GK VI+GW++G
Sbjct: 29 IEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQG 88
Query: 239 VAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNII 412
+ M +GE+ KLT P AYG+ G IPP++TL DVEL+ ++ + N + +I
Sbjct: 89 LLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVEIQGSKESDPNVFGMI 146
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 82.2 bits (194), Expect = 4e-16
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
Frame = +2
Query: 65 ETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGK---PFKFRIGKSEVIRGWDE 235
ET P D K G VVVHYTG + +G FD++RD K PF+F IG VI+G+++
Sbjct: 104 ETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQ 163
Query: 236 GVAKMSVGERAKLTCSPDYAYGQQGH---PGVIP-PNSTLIFDVEL 361
GV M VG++ K+ P AYG++G PG + N+TL +++EL
Sbjct: 164 GVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLEL 209
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 53 GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGK 208
GV +S G + G TVVV Y G NG++FDS+ G PF+F +G+
Sbjct: 873 GVRKRILSEGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEFVLGE 923
>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
Length = 639
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +2
Query: 101 KSGQTVVVHYTGTLTN----GKKFDSSRDRGKPFKFRIGKSEVIRG 226
++G V V YTG L GK FDS+ K FKF+ GK +VI+G
Sbjct: 120 ETGDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165
>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
Length = 372
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 110 QTVVVHYTGTL---TNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTC 280
Q V H+ L + ++ D SR G+PF+ +GK + W+E + M V E A+ TC
Sbjct: 93 QLAVFHFKTFLMEQSEKQELDCSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTC 152
Query: 281 SPDYAYG 301
G
Sbjct: 153 DKSVVAG 159
>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
Length = 492
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 263 RAKLTCSPDYA----YGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNIIVMSIAL 430
R +CSP A + Q+G ++ PNST +F + L R + QF +I S+ L
Sbjct: 274 RRLFSCSPHVAAIFDFYQRGSLVILNPNSTAVFQIALYRKKIAQFAFAT-SKVIETSLHL 332
Query: 431 *NSKSQLITLFFITYSH 481
+ L+ + TY+H
Sbjct: 333 RTHPTTLMLAPYYTYAH 349
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 221 RGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDV 355
R D +S GE CSP+ PG++PP+S + D+
Sbjct: 538 RQGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTDL 582
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/65 (21%), Positives = 33/65 (50%)
Frame = +1
Query: 343 YFRCRTSTSRINTICNQKLLQHHCYVNCPLKL*VTAYHIIFYHILSLKSLYQHYVYL*WK 522
Y+R + + ++++ + ++H Y+ PL++ V+ YH L + S Y Y+ + +
Sbjct: 3573 YYRASLACNPVSSVYYRASSEYHRYIIVPLRI-VSEYHRYIIVPLRIVSEYHRYIIVPLR 3631
Query: 523 YIYTY 537
+ Y
Sbjct: 3632 IVSEY 3636
>SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 299 RKHSQESRLIWHAHLQTSLPHPH 231
RK+SQ + +IW+ H Q H H
Sbjct: 109 RKNSQRNNIIWYNHFQQEHKHQH 131
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 155 KFDSSRDRGKPFKFRIG----KSEVIRGWDEGVAKMSVGERAKLT 277
KFD + G PFK R+G E ++ + G++ G+ A+ T
Sbjct: 3054 KFDETHIPGSPFKIRVGGGGAHPEKVKAYGPGLSSGHAGKSAEFT 3098
>SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5)
Length = 398
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 252 DIFATPSSQPRITSDFPILNLKGLPRSRDESNFLP 148
D+ +T SQP+I S + G+PR R SN P
Sbjct: 214 DVSSTKRSQPKIGSSALLPKSFGVPRDRSPSNEKP 248
>SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 466 YHILSLKSLYQHYVYL*WKYIYTYAIRKNF 555
+HI+ L +H+ W ++Y Y R++F
Sbjct: 100 FHIIDLNQTIKHFRVRLWYFVYLYGNREHF 129
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 466 YHILSLKSLYQHYVYL*WKYIYTYAIRKNF 555
+HI+ L +H+ W ++Y Y R++F
Sbjct: 129 FHIIGLNQTIKHFRVRLWYFVYLYGNREHF 158
>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
Length = 922
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 89 STYPKSGQTVVVHYTGTLTNGKKFD 163
+ YPKSGQT + + NG +FD
Sbjct: 36 TAYPKSGQTWTIEIVKQVLNGGEFD 60
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 608 SSILFYLTTLTFLKSILSL*FHHNTSYL 691
S+ILFY T + FLK +L H +SY+
Sbjct: 2960 STILFYDTKMAFLKRMLDHSNHRGSSYI 2987
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,117,072
Number of Sequences: 59808
Number of extensions: 438666
Number of successful extensions: 886
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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