Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0159
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   8.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 40  LVXPPGCRXFGTRRCTAITKLCNSKLIYLFIIELFN*KLI 159
           ++ PPG R F   R   I K CN + +     +L+N  LI
Sbjct: 647 IIEPPGTRFFYPDRKQVILK-CNIQDMSFLFSQLYNALLI 685


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 40  LVXPPGCRXFGTRRCTAITKLCNSKLIYLFIIELFN*KLI 159
           ++ PPG R F   R   I K CN + +     +L+N  LI
Sbjct: 737 IIEPPGTRFFYPDRKQVILK-CNIQDMSFLFSQLYNALLI 775


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 446  LRVAPEEHPVLLTEAPLNPKANREKM 523
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 209 GMCKAGFAGD 238
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,063
Number of Sequences: 438
Number of extensions: 4992
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)