Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0157
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.14 
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    29   0.57 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   3.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.0  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   3.0  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    27   3.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   4.0  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   7.0  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   9.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 440  PVAVLVP-VASEPVLVVSVAAEPDSVVPPPVSTWHRTPDP 556
            PV  ++P VA +P   V+ A  P S +PP  S++   P P
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSP 1532


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 491 VAAEPDSVVPPPVSTWHRTPDPRASGSGNFNAQTGYKY*FHLKSNLDD 634
           V  EP  ++  P S +H      AS SG  +    + Y FH   NL+D
Sbjct: 378 VDLEPGDMLYLPASWFHEVTSSSAS-SGGSDVHIAFNYWFHPPDNLED 424


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 119  VSSPKAASPTRVTMVRTTVSLTPPTRTDTSP 211
            V S  + SP  VT  + T + TP   T T+P
Sbjct: 921  VCSDGSLSPNTVTTTKATTTFTPTPTTTTTP 951


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +2

Query: 74   PPTEFVLMRRE*PLTVS--SPKAASPTRVTMVRTTVSLTPPTRTDTSPRARIFPLLPQSP 247
            PPT         P TVS  SP A SP+       T  L PP  +   P +   P +PQ P
Sbjct: 1023 PPTASQRASAYEPPTVSVPSPSALSPS------VTPQL-PPVSSRLPPVSATRPQIPQPP 1075

Query: 248  RKS*NLWSRTPVMRPLVS 301
              S  L S + V RP ++
Sbjct: 1076 PVSTALPSSSAVSRPPIA 1093


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 116 TVSSPKAASPTRVTMV---RTTVSLTPPTRTDTSPRARIFPLLPQSPRKS*N 262
           T  +P + SP++  +V    TT+S +PP  +     A I  LLP S   S N
Sbjct: 439 TSVNPHSLSPSQPPVVVPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 494 AAEPDSVVPPPVSTWHRTPDPRASGSGNFNAQTG 595
           A +P     PP+    R P+  +S +G  NA+ G
Sbjct: 69  AIDPSKSFVPPIKMQRRDPNAPSSSNGEQNAEQG 102


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 38  KLPLKASPTTSKPPTEFVLMRRE*PLTVSSPKAASPTRVTMVRTTVSLTPPTRT 199
           +LP  ASP  + P    V  +   PL  S+P  AS T  ++  T  S T P+ T
Sbjct: 545 RLPRVASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESL-STRSSPTKPSTT 597


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 34  NEVTAEGFSYDFETSNGIRADAQGVATNGVQSQGSFAYKG 153
           NEV    F   +  S G+  + Q V++N       +AY G
Sbjct: 77  NEVNVSDFLKSYLESKGLTVELQRVSSNPTVRDNVYAYLG 116


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 458 PVASEPVLVVSVAAEPDSVVPPPVSTW 538
           PV   P   VS   + D  +PP +S W
Sbjct: 232 PVLHSPPRKVSAQEQQDWQIPPSISNW 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,807
Number of Sequences: 5004
Number of extensions: 36488
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)