Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0157
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    60   2e-11
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.82 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.82 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 59.7 bits (138), Expect = 2e-11
 Identities = 37/87 (42%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
 Frame = +1

Query: 37  EVTAEG-FSYDFETSNGIRADAQGVATN-----GVQSQGSFAYKGDDGQDYSITYTADEN 198
           EV  +G +  +FETSNGI     G          V SQGS +Y   DGQ  SITY ADEN
Sbjct: 35  EVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVADEN 94

Query: 199 GYQPQGAHXXXXXXXXXXXXKSLEQNA 279
           G+Q QG+H            ++LE NA
Sbjct: 95  GFQVQGSHIPTAPPIPPEIQRALEWNA 121


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 533 TWHRTPDPRASGSGNFNAQT 592
           +W  T DP+  G+G  N QT
Sbjct: 391 SWEDTQDPQGCGAGKENYQT 410


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 533 TWHRTPDPRASGSGNFNAQT 592
           +W  T DP+  G+G  N QT
Sbjct: 391 SWEDTQDPQGCGAGKENYQT 410


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 605 SIYSRFER*SYQNPKPGD 552
           S+Y RF+R  Y+ P  G+
Sbjct: 604 SLYGRFKRGKYEEPTVGE 621


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 313 YHHQRYQRPHHGRSAP 266
           +HH     PHH  S P
Sbjct: 432 HHHSHAATPHHQHSTP 447


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 319 GMYHHQRYQRPHHGRSAPKISRFPRGLGEEWEDARPGAGIRSRR 188
           G+Y+HQR  R     SA  +SR    +       R G  I SRR
Sbjct: 14  GLYYHQRCSRDWFRISAGCVSRISNRISRNRVLLR-GQCISSRR 56


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 472 LRSHRHQHRYRIRLQKHRFQHRRSQSYGRLR 380
           LRS   + R + R +    Q  R Q Y +L+
Sbjct: 27  LRSRTKEERLQYRREAWLVQQEREQEYEKLK 57


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 313 YHHQRYQRPHHGRSAPKIS 257
           YHH      HH  SAP ++
Sbjct: 510 YHHVAPPSGHHASSAPLLA 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,161
Number of Sequences: 438
Number of extensions: 3036
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)