Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0156
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103     31   0.86 
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339...    29   3.5  
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601...    29   4.6  
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979...    29   4.6  
02_01_0733 - 5477110-5477421,5478146-5478166                           28   6.1  
01_06_0881 + 32692345-32692497,32693167-32693286,32693382-326934...    28   6.1  
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377...    28   8.0  

>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
          Length = 196

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 377 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 475
           CGD+ C   G+FC G  D     S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190


>02_04_0207 +
           20933319-20933427,20933503-20933701,20933785-20933931,
           20934683-20934764,20935542-20935697,20935948-20936121,
           20936278-20936349,20937012-20937083,20937322-20937440,
           20937540-20937625,20937747-20937799,20938076-20938153
          Length = 448

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 536 EDGTVIPGDLPARDVPQMITITFDDA 613
           EDG +  GD   R VP ++T  FDDA
Sbjct: 48  EDGQLGHGDAEDRPVPTVLTAAFDDA 73


>06_03_0345 +
           19758188-19758382,19759857-19759952,19760061-19760144,
           19760504-19760573,19760934-19761838,19763661-19764287
          Length = 658

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 305 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 478
           + +ER+    L   E    +G ++C  ST         G+K+  DG D+   D   +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498


>04_03_0809 +
           19896801-19897170,19897265-19897513,19897850-19897900,
           19898007-19898267,19898427-19898479,19898746-19898887,
           19898972-19899226,19899616-19900640
          Length = 801

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -2

Query: 460 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIFHSI 281
           T++ + S+A +LF +     F   +V  +   I++ WF  +     + L+V E+TI  + 
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282

Query: 280 FP 275
            P
Sbjct: 283 NP 284


>02_01_0733 - 5477110-5477421,5478146-5478166
          Length = 110

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 275 WKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFC--NGEKDCGDGSD 448
           W   +K+ K +   R+   L Y     C D  LA GD TC  R L    +G  D  DG  
Sbjct: 34  WTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGD-TCFFRALRSAGSGAGDVDDGDG 92

Query: 449 EN 454
           ++
Sbjct: 93  DH 94


>01_06_0881 +
           32692345-32692497,32693167-32693286,32693382-32693474,
           32694197-32694283,32696052-32696063,32696553-32696625,
           32697073-32697182,32697608-32697658,32698154-32698242,
           32698518-32698599,32698680-32698793,32699015-32699094,
           32699749-32699884,32700210-32700280,32700363-32700457,
           32700467-32700597,32701009-32701398
          Length = 628

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 383 DSTCIERGLFCNGE-KDCGDGSD--ENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVI 553
           D  C+  G FCNG     GD S+  +N+  +  D +R P   S   +L        G V 
Sbjct: 444 DEHCLYAGAFCNGHGYGTGDSSNKHQNANSVPFDDSRTPSDQSLSNILSTTRGYIKG-VC 502

Query: 554 PGDLPARDVPQMITITFDDAINNNN 628
           PG   A+ +    +   D++I  N+
Sbjct: 503 PGLTHAQKLGISYSAEEDNSIQQNS 527


>12_02_0405 -
           18635503-18635871,18636703-18636817,18636970-18637721,
           18638540-18638542
          Length = 412

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +2

Query: 275 WKDAVKNCKLKNKERKIKPLLYTEEPLCQ--DGFL---ACGDSTCIERGLFCNGEKDCGD 439
           W+D V   + + + R+ KPL++ ++   +    FL     GD       LF   E+D  D
Sbjct: 59  WRDVVDEVEPEVQRRRAKPLVFFKDGRYEPASAFLLHDVAGDCDVTSLSLFREEEED-DD 117

Query: 440 GSDENSCDIDNDPNRAPPCDSSQCV 514
           G D +     N+ +    C+   C+
Sbjct: 118 GGDRDFFARYNNDDMVGSCNGLICL 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,126,490
Number of Sequences: 37544
Number of extensions: 435686
Number of successful extensions: 1456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)